Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B04
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   4.4  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   7.8  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    24   7.8  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  DNDEWKVSYI*KCPFCLKCHLLIAAISRILMKYT 172
           DND  +      C F ++CH+  A++S ++   T
Sbjct: 210 DNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVT 243


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 221 NCLY*NINVYQVKLLNW 171
           NC+  N+  Y ++L+NW
Sbjct: 440 NCVLSNLGKYNLELMNW 456


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 81  SSLS*PIILNTIHSTFNTTLN 19
           SS++ P+ LNT    FN T+N
Sbjct: 384 SSITSPLCLNTSSIVFNATVN 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 934,945
Number of Sequences: 5004
Number of extensions: 14675
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)