Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B04
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10488| Best HMM Match : aPHC (HMM E-Value=0.82)                     27   3.2  
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    26   9.7  

>SB_10488| Best HMM Match : aPHC (HMM E-Value=0.82)
          Length = 208

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 183 AVKLVYFINILLIAAISRWHFKQNGHFYI 97
           ++ L+ +I +LL+  I++W FK+   +Y+
Sbjct: 42  SINLLIYIGLLLLTIITQWIFKRYRFWYV 70


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 74  CHSRLFLIQFTVLSILH*TRVS 9
           C SR++L+  TVL  L+ TRV+
Sbjct: 93  CDSRMYLVSLTVLPGLYNTRVT 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,700,660
Number of Sequences: 59808
Number of extensions: 102706
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)