Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B04
         (348 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87969-1|BAA13522.1|  337|Homo sapiens CMP-sialic acid transport...    28   7.0  
BC017807-1|AAH17807.1|  337|Homo sapiens solute carrier family 3...    28   7.0  
AL049697-6|CAB76857.1|  337|Homo sapiens solute carrier family 3...    28   7.0  
AJ851890-1|CAH65470.1|   65|Homo sapiens CMP-sialic acid transpo...    28   7.0  
AJ851889-1|CAH65469.1|  189|Homo sapiens CMP-sialic acid transpo...    28   7.0  
AJ851888-1|CAH65468.1|  278|Homo sapiens CMP-sialic acid transpo...    28   7.0  
AJ810303-1|CAH17781.1|  227|Homo sapiens mutated CMP-sialic acid...    28   7.0  
AJ810302-1|CAH17780.1|  108|Homo sapiens mutated CMP-sialic acid...    28   7.0  

>D87969-1|BAA13522.1|  337|Homo sapiens CMP-sialic acid transporter
           protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>BC017807-1|AAH17807.1|  337|Homo sapiens solute carrier family 35
           (CMP-sialic acid transporter), member A1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>AL049697-6|CAB76857.1|  337|Homo sapiens solute carrier family 35
           (CMP-sialic acid transporter), member A1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>AJ851890-1|CAH65470.1|   65|Homo sapiens CMP-sialic acid
           transporter protein.
          Length = 65

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>AJ851889-1|CAH65469.1|  189|Homo sapiens CMP-sialic acid
           transporter protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>AJ851888-1|CAH65468.1|  278|Homo sapiens CMP-sialic acid
           transporter protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>AJ810303-1|CAH17781.1|  227|Homo sapiens mutated CMP-sialic acid
           transporter A1 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


>AJ810302-1|CAH17780.1|  108|Homo sapiens mutated CMP-sialic acid
           transporter A1 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 FCLKCHLLIAAISRILMKYTNLTA*LDTHLYFSTNS 220
           +CL    L+AA+  I ++YT  +   D  LYFST +
Sbjct: 15  YCLAVMTLMAAVYTIALRYTRTS---DKELYFSTTA 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,402,845
Number of Sequences: 237096
Number of extensions: 485331
Number of successful extensions: 467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)