Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B02
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   0.90 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   2.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   8.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 162 PLCTAXKGLLGNQKKIFLPKPWCYGG 85
           P C    G L N+KK+ +P+  C  G
Sbjct: 69  PGCVCRLGYLRNKKKVCVPRSKCLPG 94


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 162 PLCTAXKGLLGNQKKIFLPKPWC 94
           P C    G L N+KK+ +P+  C
Sbjct: 69  PGCVCRLGYLRNKKKVCVPRSKC 91


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -2

Query: 336 SFPPENKSISAYTLKIFTHTYKVFLILFCIDLPPPLNNSRIFIRVL 199
           S+PP+N+S       + T    + ++LF   +     N+ + + V+
Sbjct: 26  SYPPQNRSQEEDLWNLATDRAGLAILLFLFSVATVFGNTLVILAVV 71


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 588 LSPICCNSGNVKYYL 632
           + P  CN+G  KYYL
Sbjct: 402 VDPAGCNAGPAKYYL 416


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 417 ETAHIKMTSKRQLYNKLNLFKGN 485
           +++ I +   +Q+Y +LN ++GN
Sbjct: 492 KSSRINIERMKQVYQQLNKYRGN 514


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 669 YKTNLKQICIFCNSMSFNTYCVLSIEM*YQELHLVPQYNKHE 794
           Y T+  +I IF  ++   +YC+  I + Y    +V     HE
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHE 242


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 696 YIFVLGLFCMVATILDRFKNVV 631
           ++FVLGL   V TI+  +  +V
Sbjct: 68  FLFVLGLIVPVFTIVSSYAAIV 89


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 507 ITSV*RIRGKHVSCFLS 557
           +T + R RG HVSC  S
Sbjct: 108 LTQIRRDRGLHVSCSFS 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,331
Number of Sequences: 438
Number of extensions: 5461
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)