Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A21
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.24 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.74 

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
 Frame = +1

Query: 19  RNLPFKQTIHFPQSMTTQVSSPLPVATSPEPRETTTELDESVKVTKDSRSNSPLPAE--- 189
           R  P K+ I   QS    +  P P  T+    +  ++  +    T ++R +S L  +   
Sbjct: 196 RITPAKKRIKLEQS---PLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKM 252

Query: 190 -VPLPRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQPEVEREKSDVPLEPVRTE 366
             P+  E PI A     +     S  TP  S    + +    PE+++E  D+  + ++TE
Sbjct: 253 LTPIKSE-PIDAYEMHQISKKKLSPATPKGSKCSMITT----PEIKKEVEDMEYDDIKTE 307

Query: 367 VVEPMESTEP 396
           +   M    P
Sbjct: 308 LSTGMNDDIP 317


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 417 LC*TA*NEGFSGVHKSRTAXSEGSFGDCNSRTARRKGVCXY 539
           +C T   +  SG H S    S G+  DC++    R+ +C Y
Sbjct: 293 ICVTTGTKCVSGEHLS---VSGGALNDCHAEVVARRCLCEY 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.304    0.123    0.330 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,548
Number of Sequences: 438
Number of extensions: 3129
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)