Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A17
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0314 - 14190245-14191006                                         30   2.0  
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    29   3.6  
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505...    29   4.7  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    28   8.3  

>06_02_0314 - 14190245-14191006
          Length = 253

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 377 RIIYFFNVVLSILDFLSVLPVVSKSGACF 291
           R I FF+ VLS++ FLSV       GACF
Sbjct: 181 RFIDFFHAVLSLIVFLSVAMFDHNVGACF 209


>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 456 RVRSGDVTGSYIYKDGKNDLVKVRYWSDRDGFH 554
           +V  GD TG+ +   G NDL+ +R+  D +  H
Sbjct: 851 QVLDGDSTGNLVVPIGMNDLINLRHLIDHEEVH 883


>07_01_0675 +
           5055842-5055950,5056036-5056193,5056276-5057067,
           5057544-5057760,5058280-5058449,5058986-5059630
          Length = 696

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 447 VENRVRSGDVTGSYIYKDGKNDLVKVRY 530
           V N V S  +TG Y+Y+ G +  +  RY
Sbjct: 537 VNNNVGSASITGGYVYRSGTDPCLAGRY 564


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 153 DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 299
           D   I I    A    NS PFT   +P+ +    V+PL KYN   +  V  G
Sbjct: 243 DSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLG 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,702,466
Number of Sequences: 37544
Number of extensions: 489764
Number of successful extensions: 1514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)