Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A17
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidan...    33   0.26 
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    30   1.8  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AC006648-10|AAF39859.1|  305|Caenorhabditis elegans Btb and math...    30   2.4  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    28   9.7  
L14433-1|AAA27979.1|  398|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    28   9.7  
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    28   9.7  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/85 (25%), Positives = 31/85 (36%)
 Frame = +1

Query: 313 TTGRTERKSRILRTTLKKYMMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARIS 492
           TT  T   +    TT       P TT        PT T     + +   + P T+P   +
Sbjct: 225 TTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTT 284

Query: 493 TRTAKMISSRYVTGQTVTVSTRKTT 567
           T T    +++     T T  T KTT
Sbjct: 285 TPTTTTTTAKTTKSTTTTTKTTKTT 309


>U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidance
           abnormal protein10 protein.
          Length = 419

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +1

Query: 292 KQAPLLDTTGRTERKSRILRTTLKKYMMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 471
           K+  LLD +    +KS ++ TT KK         K +   +P+            AS P+
Sbjct: 11  KKTSLLDPS---PKKSSVIETTTKK---TSGIESKLLPNELPSTGTTGTSGVKNGASSPK 64

Query: 472 TSPARISTRTAKMISSRYVTGQTVTVST---RKTTYLRS 579
           TSPA+ +T T  +++ +     T  +ST   RK T  +S
Sbjct: 65  TSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKS 103


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +3

Query: 294 AGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 464
           +G T+     N  +  N  +Y+++  D  Q +   G +  Y + ++ +PE++K +EN + 
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361

Query: 465 SGDVTGSYIYKDGKNDLVKVRYWSDRD 545
                     K   NDLVKV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 717 YQQTYKALPSDYYQPQASEQQASVVAPPNSQP 812
           YQQ + +LP     PQ  +QQ S + PP   P
Sbjct: 740 YQQQHPSLPRSASTPQPIQQQQSSIPPPPPPP 771


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 717 YQQTYKALPSDYYQPQASEQQASVVAPPNSQP 812
           YQQ + +LP     PQ  +QQ S + PP   P
Sbjct: 740 YQQQHPSLPRSASTPQPIQQQQSSIPPPPPPP 771


>AC006648-10|AAF39859.1|  305|Caenorhabditis elegans Btb and math
           domain containingprotein 5 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +3

Query: 303 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 443
           TL H +KN  ++E+        ED+    ++ S  H ++ LG Y Y Y++ ESA
Sbjct: 9   TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 741 PSDYYQPQASEQQASVVAPPNSQPXRRQGLS 833
           P+ Y QPQA  QQ  +  PP  QP  +Q ++
Sbjct: 470 PNPYVQPQAPVQQ-QIAQPPPQQPAPQQPMN 499


>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 770 GCLWLVIITWKGFVGLLVII 711
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>L14433-1|AAA27979.1|  398|Caenorhabditis elegans Hypothetical
           protein C50C3.7 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = +3

Query: 234 GRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 413
           GR  ++  IK  D RF+    G   GH    G  ++    Y     D+   HG +  G  
Sbjct: 88  GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147

Query: 414 AYGYQT 431
              Y T
Sbjct: 148 VEQYHT 153


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 770 GCLWLVIITWKGFVGLLVII 711
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 770 GCLWLVIITWKGFVGLLVII 711
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,353
Number of Sequences: 27780
Number of extensions: 408914
Number of successful extensions: 1405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)