Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A16
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 52 8e-08
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 41 2e-04
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 31 0.27
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.63
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 27 2.5
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 2.5
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch... 27 2.5
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 26 5.9
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 26 5.9
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 7.8
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 52.4 bits (120), Expect = 8e-08
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = +1
Query: 556 EIFFFKEGAVVFWNCSELEASNV---LEFVKPYELESYPREVIEKEREIMTYIYQPNSKK 726
EIF F G VVFWN S + ++ L F L P E E E + + Y PN+K+
Sbjct: 240 EIFVFSYGVVVFWNFSLSQEKDILADLTFGGDNSLMVKPLAEEECEIEDLHFHYAPNTKR 299
Query: 727 CHLQESCFIMVPERDNSLXRFAFSHAMAXSARLGAWEAR 843
+ I +P DN + + A SHA+A S +L +E R
Sbjct: 300 PRIYND-MIHIPSADNKM-KLAMSHALAQSVKLSRFELR 336
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 553 REIFFFKEGAVVFWNCSELEASNVLEFVKPYELESYPREVIEKE--REIMTYIYQPNSKK 726
RE+F F G VV W + E L + +E+E E +E E +T +YQP
Sbjct: 156 REVFCFTYGVVVLWGYTIDEEHRFLRELGRFEIEKLKIEDMEVEEFNYYITTLYQPRI-- 213
Query: 727 CHLQESCFIMVPERDNSLXRFAFSHAMAXSARLGAWE 837
+ FI + + N + R + SHA+A S ++ +E
Sbjct: 214 ----FNDFIALRDASNYMIRLSISHAIAQSVKISLFE 246
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 148 MLKTAIRGRVACVLPT-GAISPKQQFISIKSVYIPVLN 258
+L A+ CV+P+ G + PK++FIS + V IP N
Sbjct: 120 LLDVALANPKDCVVPSSGLLMPKEEFISNEEVGIPATN 157
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.5 bits (63), Expect = 0.63
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 604 ELEASNVLEFVKPYELESYPREVIEKEREIMTYIYQPNSKKCHLQESCFIMVPERDNSLX 783
EL+ + L K E+ + R++ EKE + + NS HLQE I+ + D
Sbjct: 300 ELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQEDYAILQAKCDEFAD 359
Query: 784 R 786
R
Sbjct: 360 R 360
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 247 PVLNQLSRRFRSSDAIQPTAALENASIPLKKKIVHKKSIAENLSQKEGHFLTLAYATANS 426
P L+ + SS A++ T L+N K +K+ AENL+ + L L T S
Sbjct: 26 PRLDNFFKTNTSSPALKDTQVLDNKENNSVSKF-NKEKWAENLTPAQRKLLQLEIDTLES 84
Query: 427 YDLKALKEALVE 462
ALK+ ++
Sbjct: 85 SWFDALKDEFLK 96
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.5 bits (58), Expect = 2.5
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = +1
Query: 169 GRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQPTAALENASIPLKKKIV 348
G + ++PT + QF+ ++ Y V N LS+ + + E AS L +
Sbjct: 101 GSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSETEPKMPSYMDDEEASDSLPLSLS 160
Query: 349 HKKSIAENLSQKEG-HFLTL--AYATANSYDLKALKEALVEQKLYEP 480
+ ++ +QK H LT+ YA N + L +K YEP
Sbjct: 161 SQSLSSQVTNQKPAPHRLTMRERYAANNLTNGLQFTLPLSSRKTYEP 207
>SPAC1556.03 |azr1||serine/threonine protein phosphatase
Azr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 493 TVEIGNVVVANAVYNIGSEQ-REIFFFKEGAVVFWNCSELEAS--NVLEFVKPYELESYP 663
TVE G+ ++N G+ + + G ++ N + AS VL+F PY+L YP
Sbjct: 122 TVEAGSSTACLTLFNCGNGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYP 181
Query: 664 R 666
R
Sbjct: 182 R 182
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 112 NVFQNVEMSIYTIIFKCY 59
++F N +M+ YT+IF C+
Sbjct: 157 SIFSNQKMTAYTVIFYCF 174
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 355 FYALSSFSKEYWHFLKPQ 302
+Y LSSF YW+ L PQ
Sbjct: 263 YYQLSSFEVRYWNNLLPQ 280
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 5.9
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +1
Query: 454 LVEQKLYEPGNLKTVEIGNVVVANAVYNIGSEQREIFFFKEGAVVFWNCSELEASNVLEF 633
L + + +PG LK + NV+ N++++ G + + C +E+ + L
Sbjct: 120 LAHKVMAKPGKLKNILGSNVIDVNSIHDQGIKTLGMGLQSTVISDDGLCEGIESKDGLII 179
Query: 634 VKPYELESYPREVIEKE-REIMTYIYQPNSKKCHLQES-CFIMVPERDN 774
++ +P +I+K+ + + Y N K H+++S F VP +
Sbjct: 180 ----GVQWHPEAIIDKQPHSLKLFQYFINRSKWHMKQSNIFSNVPHESS 224
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 604 ELEASNVLEFVKPYELESYPRE 669
E +NV E + P+E ES+P E
Sbjct: 154 ESPGNNVFEAISPHERESFPSE 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,789
Number of Sequences: 5004
Number of extensions: 71264
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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