Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A16
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 182 QATLPRIAVFNILDRYTDILF 120
           + ++P+I   NI+D+Y+ I+F
Sbjct: 452 RVSMPKIKDVNIIDKYSRIIF 472


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 726 MSPPRVVLHNGAR 764
           + PPRV+L +GA+
Sbjct: 630 LEPPRVILSSGAK 642


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 726 MSPPRVVLHNGAR 764
           + PPRV+L +GA+
Sbjct: 630 LEPPRVILSSGAK 642


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 726 MSPPRVVLHNGAR 764
           + PPRV+L +GA+
Sbjct: 630 LEPPRVILSSGAK 642


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 473 YSFCSTNASFRALRS*ELAVAYARVKKCPSF*LKFSAIDF 354
           Y  C+ N     LR       Y R+KKC +  +   A+ F
Sbjct: 101 YRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRF 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,479
Number of Sequences: 438
Number of extensions: 5148
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)