Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A11
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    50   4e-07
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    27   4.0  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   7.1  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    26   7.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
 Frame = +2

Query: 29  FMMKKKRYKFEVQCCLEELTEVPFVSAVLFAK--VRLLDGGNFQEHSSREEVRNHAVRWN 202
           F+ K +R  FE+   + ++  +P ++ V+F K  +  +   +  + +  E V  H V W 
Sbjct: 4   FIPKARRPTFELHLRIHDVVNIPLITGVIFVKWNIEGIHSRHANDQTEAEPVLEHRVTWE 63

Query: 203 AQFTFMCKMCANASTGVLXPALLRVSVRKECKGGRSYQKLGFCDLNLAELAGAGETTRRC 382
            +     +M  + +  +L    L + V  +        +LG   +NL E    G+ TR+ 
Sbjct: 64  YETCVSVRMIID-NDNLLKDKFLILQVLCDSHTDSGVIRLGILKINLTEYVYVGQDTRKY 122

Query: 383 LLXGYDNRTRQDNSVLRLRIKMNMISGDPLFXV 481
           LL   D++    N+ +R+ I +   SG+  F V
Sbjct: 123 LLA--DSKI---NATIRIGISLKQTSGNKDFRV 150


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 135 STAGISRSIPAERRCATTPSGGTLSSRSCARCAPTPAPESWXRXCSGSPSEKSAK 299
           S+A  + S+  +   ATT   G +SS   +R   TP P S        PS +S K
Sbjct: 281 SSASTAESLD-DGHSATTIQQGDVSSYPLSRSVSTPVPMSPISISPAKPSPQSPK 334


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 198 HRTAWLRTSSLLECSWK 148
           H T W+  + LL+ SWK
Sbjct: 641 HSTTWINLAELLDMSWK 657


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 110 VLFAKVRLLDGGNFQEHSSREE 175
           +L AKV LL   +FQEH  R E
Sbjct: 154 LLLAKVSLLGPDHFQEHFERSE 175


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -2

Query: 240 ALAHILHMNVN*AFHRTAWLRTSSLLECSWKFPPS--SSLTLANKTAXTKGTSVNSSKQH 67
           A A   + NV+ +   TA+   SS +  S     S  S +T    +  T+G+SV SS+  
Sbjct: 171 ATASFSYTNVSSSVIATAYTSASSTILSSPSVEQSTPSIITQTESSTTTEGSSVASSEST 230

Query: 66  CTSNLYRFFFIMKAMTTPTS 7
             ++    F   ++   PT+
Sbjct: 231 IANSDQSSFITYESTQNPTA 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,753
Number of Sequences: 5004
Number of extensions: 41702
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)