Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A11
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0310 + 20114415-20117819 32 0.60
05_05_0096 - 22351488-22351742 31 1.4
06_01_0783 + 5857950-5857979,5859474-5860424 29 3.2
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 29 3.2
09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614... 29 4.2
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 29 4.2
08_02_0983 - 23281787-23281931,23282045-23282163,23282765-232828... 29 5.6
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 29 5.6
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 28 7.4
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 9.7
06_02_0218 + 13178709-13179034,13180116-13180152 28 9.7
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 253 LGXGXAQGLRQKRVQRRQIVSEAGLLRFELGGAGGRRGDDETV 381
L G L+Q + Q+ +EAG + LGG GG RG+ E V
Sbjct: 33 LNGGVPDALKQLEDELNQLRAEAGCVERCLGGGGGGRGNCELV 75
>05_05_0096 - 22351488-22351742
Length = 84
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 144 GISRSIPAERRCATTPSGGTLS---SRSCARCAPTPAP-ESWXRXCSGSPSEKSAK 299
G+ R P ++R T G+ + SR A C+P P P S+ R C+ E+ A+
Sbjct: 9 GVKRREPCKKRIGRTAGAGSEAGNGSRHQASCSPPPPPSSSFPRRCARLVKEQRAR 64
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 231 APTPAPESWXRXCSGSPSEKSAKEADRIRSWASAI*TWRSWR 356
AP+P+P SGSP++K+ + R S ++ WR WR
Sbjct: 179 APSPSPSPLGVAASGSPAKKADQFTTRPASKSAG---WRRWR 217
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -1
Query: 349 LRQVQIAEAQLLIRSASFALFSDGDPEQXRXQDSGAGVGAHLAH-ERELSVPPDGVVAHL 173
LR + + ++L+ +A+ ALF DG+ + R + AG G+ + ER ++ +V +L
Sbjct: 133 LRSLPRKDVEVLVANAAPALFKDGEASELRLRQYLAGEGSDVTQSERAETI---DIVRYL 189
Query: 172 LS 167
LS
Sbjct: 190 LS 191
>09_04_0726 +
19758916-19759098,19759774-19760318,19760581-19761492,
19762067-19762328
Length = 633
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -1
Query: 205 SVPPDGVVAHLLSAGMLLEIPAVEQPHFGK*NGRXERHLSQLLQTALYLK-LIPFLLHHE 29
S+PP+ + +++ GM E+P EQ + R R ++ ++L+ L+P++ + +
Sbjct: 562 SLPPEELRPFMVAPGMAHEMPPAEQELGIEVRPRAPREVAGRNPALVFLESLLPWVDYGD 621
Query: 28 SHDDTN 11
+H D N
Sbjct: 622 NHHDEN 627
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 108 PFYLPK*GCSTAGISRSIPAERRCATTPSGGTLSS 212
P +P+ G S G+SR+ + RR + TPS LS+
Sbjct: 489 PGDIPESGTSIGGLSRAASSLRRLSPTPSAAPLSA 523
>08_02_0983 -
23281787-23281931,23282045-23282163,23282765-23282871,
23284392-23284470,23285054-23285143,23285259-23285531,
23285617-23285769,23285969-23286290,23286428-23286672
Length = 510
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +1
Query: 283 QKRVQRRQIVSEAGLLRFELGGAGGRRGDDETVPTXGLRQQDEAGQLGAQAEDQ 444
Q R + R I+SE R GG GG GDD R AG + +DQ
Sbjct: 240 QARKRLRAILSEIVAERRARGGGGGGGGDDLLGGLMRSRDDGTAGAVALLTDDQ 293
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 28.7 bits (61), Expect = 5.6
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Frame = +2
Query: 41 KKRYKFEVQCCLEELTEVPFVSAVLFAKVRLLDGGNFQEHSSREEVRNHAVRWNAQFTFM 220
K ++ ++ C E++ +V FA+ LL G+ Q +S + E V +F
Sbjct: 294 KSLEEYLLRICSGEISGEDGAHSVNFAEAALLLQGSVQVYSRKVEYLYTLVLNALEFLSQ 353
Query: 221 CK---MCANAS-TGVLX---PALLRVS-VRKECKGGRSYQKLGFCDLNLAELAGAGETTR 376
K AN T VL P L VS V ++ G SY L +C ++
Sbjct: 354 KKNERFNANYDHTRVLKDKRPILYLVSHVNRDSSNGCSYHNLTYCSIDPTTCCSFSNLAA 413
Query: 377 RCLLXGYDNRTRQDNS 424
C+ +R Q+NS
Sbjct: 414 NCVKHLKHSRQDQENS 429
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 114 YLPK*GCSTAGISRSIPAERRCATTPSGGTLSSRSCARCAPTPAPESWXRXCSGSPSEKS 293
+L K C+T PA C T + SSR+C RC + S + E+
Sbjct: 20 HLSKPSCATFSARALPPAAHCCRTVVAAAAPSSRTC-RCRSVSSESSTAAAADTADDEEE 78
Query: 294 AKEAD 308
++D
Sbjct: 79 VTKSD 83
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 159 IPAERRCATTPS----GGTLSSRSCARCAPTPAP 248
IP+ +CAT PS ++S+ CARC P
Sbjct: 35 IPSSTKCATRPSPFSLSPSISTPGCARCGDVGCP 68
>06_02_0218 + 13178709-13179034,13180116-13180152
Length = 120
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 286 KRVQRRQIVSEAGLLRFELGGAGGRRG 366
+RV+ R + +EAG R G GGR G
Sbjct: 76 RRVEARPVAAEAGTARGGAAGGGGRLG 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,482
Number of Sequences: 37544
Number of extensions: 366458
Number of successful extensions: 1585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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