Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A11
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...   144   6e-35
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.    144   6e-35
U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic letha...   141   4e-34
AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.    141   4e-34
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    32   0.54 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    32   0.54 
Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    28   6.6  

>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score =  144 bits (349), Expect = 6e-35
 Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
 Frame = +2

Query: 23  MAFMMKKKRYKFEVQCCLEELTEVPFVSAVLFAKVRLLDGGNFQEHSSREEVRNHAVRWN 202
           MAF+ K+K  KF V   + +L++VP V+A +F K+RLLDGG+F+E + R EV+NH+  +N
Sbjct: 1   MAFI-KRKTVKFSVDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFN 59

Query: 203 AQFTFMCKMCANASTGVLXPALLRVSVRKECKGGRSYQKLGFCDLNLAELAGAG--ETTR 376
            +F F C++  + ++G L   L RVS+RKE KGG+SY KLGF D+NL+E A +G    +R
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 377 RCLLXGYDNRTRQDNSVLRLRIKMNMISGDPLFXVP 484
             LL GY +  R DNS + +++ M   S DP F VP
Sbjct: 120 TYLLNGYTSNQRLDNSKVCIKVAMTHQSADPFFRVP 155


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score =  144 bits (349), Expect = 6e-35
 Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
 Frame = +2

Query: 23  MAFMMKKKRYKFEVQCCLEELTEVPFVSAVLFAKVRLLDGGNFQEHSSREEVRNHAVRWN 202
           MAF+ K+K  KF V   + +L++VP V+A +F K+RLLDGG+F+E + R EV+NH+  +N
Sbjct: 1   MAFI-KRKTVKFSVDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFN 59

Query: 203 AQFTFMCKMCANASTGVLXPALLRVSVRKECKGGRSYQKLGFCDLNLAELAGAG--ETTR 376
            +F F C++  + ++G L   L RVS+RKE KGG+SY KLGF D+NL+E A +G    +R
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 377 RCLLXGYDNRTRQDNSVLRLRIKMNMISGDPLFXVP 484
             LL GY +  R DNS + +++ M   S DP F VP
Sbjct: 120 TYLLNGYTSNQRLDNSKVCIKVAMTHQSADPFFRVP 155


>U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform b protein.
          Length = 158

 Score =  141 bits (342), Expect = 4e-34
 Identities = 71/155 (45%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
 Frame = +2

Query: 23  MAFMMKKKRYKFEVQCCLEELTEVPFVSAVLFAKVRLLDGGNFQEHSSREEVRNHAVRWN 202
           MAF+ K+K  KF V   + +L++VP V+A +F K+RLLDGG+F+E + R EV+NH+  +N
Sbjct: 1   MAFI-KRKTVKFSVDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFN 59

Query: 203 AQFTFMCKMCANASTGVLXPALLRVSVRKECKGGRSYQKLGFCDLNLAELAGAG--ETTR 376
            +F F C++  + ++G L   L RVS+RKE KGG+SY KLGF D+NL+E A +G    +R
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 377 RCLLXGYDNRTRQDNSVLRLRIKMNMISGDPLFXV 481
             LL GY +  R DNS + +++ M   S DP F V
Sbjct: 120 TYLLNGYTSNQRLDNSKVCIKVAMTHQSADPFFRV 154


>AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.
          Length = 158

 Score =  141 bits (342), Expect = 4e-34
 Identities = 71/155 (45%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
 Frame = +2

Query: 23  MAFMMKKKRYKFEVQCCLEELTEVPFVSAVLFAKVRLLDGGNFQEHSSREEVRNHAVRWN 202
           MAF+ K+K  KF V   + +L++VP V+A +F K+RLLDGG+F+E + R EV+NH+  +N
Sbjct: 1   MAFI-KRKTVKFSVDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFN 59

Query: 203 AQFTFMCKMCANASTGVLXPALLRVSVRKECKGGRSYQKLGFCDLNLAELAGAG--ETTR 376
            +F F C++  + ++G L   L RVS+RKE KGG+SY KLGF D+NL+E A +G    +R
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 377 RCLLXGYDNRTRQDNSVLRLRIKMNMISGDPLFXV 481
             LL GY +  R DNS + +++ M   S DP F V
Sbjct: 120 TYLLNGYTSNQRLDNSKVCIKVAMTHQSADPFFRV 154


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 138 TAGISRSIPAERRCATTPSGGTLSSRSCARCAPTPAPES 254
           + G S S  A       PSGG   S S A  AP PAP S
Sbjct: 556 SGGYSGSEAAPEAAPAAPSGGYSGSESSAPAAPEPAPSS 594


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 138 TAGISRSIPAERRCATTPSGGTLSSRSCARCAPTPAPES 254
           + G S S  A       PSGG   S S A  AP PAP S
Sbjct: 556 SGGYSGSEAAPEAAPAAPSGGYSGSESSAPAAPEPAPSS 594


>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 152 GNSRRRAASLWQIKRQXRKAPQSTPPNSTVPQTYTVSSSS 33
           GN   +A+S  ++  +    P   PP ST P+T + + S+
Sbjct: 205 GNDHEQASSETRVSIESDAPPNPAPPPSTTPETSSTTPST 244


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1174

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 238 VGAHLAHERELSVPPDGVVAHLLSAGMLLEIPA-VEQPHFGK 116
           V AH+A    L+VP   VVA  LS+  LL I   ++ P F K
Sbjct: 339 VNAHVAVFNNLNVPLPSVVAGFLSSSDLLHISEDIKSPWFKK 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,426
Number of Sequences: 27780
Number of extensions: 263520
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)