Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A10
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 30 0.47
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 0.63
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.83
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 3.3
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 27 3.3
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 27 4.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 7.7
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.7
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 7.7
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.47
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
Frame = +1
Query: 292 KLEDYLPEGEVSSNNIQHISEREPDDGDI-DPSQDPMAGTIFMERSKASIENGMTRKRSQ 468
K D PEG+ S+ S+ + DG I DP Q + S+ T ++Q
Sbjct: 74 KAPDSKPEGDKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQ 133
Query: 469 HQIADNKLKKSSSCSTIYL---DDSTVSQPNLKNTVRCVA-LAIYYHIKNRMSERRLDIF 636
++ + ++S+S +T L + + + ++ + A + K+ SE R +
Sbjct: 134 SKLIEKPRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNSKSPPSENRKNRL 193
Query: 637 DEKLHPLSKEGVSDDYDKYNPEHKQIY 717
L P++ V D Y E ++
Sbjct: 194 QNVLSPIASNNVPDFNQNYPTESNPMF 220
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 628 DIFDEK-LHPLSKEGVSDDYDKYNPEHKQIYKFVRTLFNAAQLTAECAI 771
++F +K + L E DDY+K E+K++YK ++ + + +A C I
Sbjct: 175 ELFTQKQMLQLQNENFKDDYEKIKEENKRLYKERKSFLSKIEKSA-CEI 222
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 29.1 bits (62), Expect = 0.83
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +1
Query: 385 SQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLKKSSSCSTIYLDDST-VSQPNLKN 561
++ P+ F SK+S +NG+ H I N ++ S S S+ +L T + N+K
Sbjct: 194 TRSPLRNHNFSNPSKSS-KNGV------HTI--NNMQSSPSPSSSFLLPLTQIDSQNVKR 244
Query: 562 TVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSK 663
+ ++ + ++ R+ R+D+ DE LHP S+
Sbjct: 245 SNNYLSTSPPI-LEQRLKRHRIDVSDEDLHPSSQ 277
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 228 DFTTYDDYKECSLSFYTHCVTTRYTEII 145
D D++ + L FY C T+++ EII
Sbjct: 475 DCQKIDEFMDAELKFYKECQTSQWEEII 502
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 568 SQCFSNLVETQYYHLSKL*NRNCFSLIYCQLFD 470
SQC +LV+ YY L NR+ F ++ ++FD
Sbjct: 237 SQCIPHLVQKSYY----LQNRHVFPCVHWEVFD 265
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 221 QHMTITKNVRYHSTHIVSRLDIRK**ADTEIR 126
QH+ + K ++Y + LD++K DTEI+
Sbjct: 99 QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIK 130
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 7.7
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +1
Query: 37 MNAMNSKISTICESENSTNQE**GTMGLLCLI-SVSAYYFRISSRDTMC--VE**RTFFV 207
++ MN+ T+ SE + + +G + L+ + ++S +D + ++ R V
Sbjct: 946 LDIMNNNAETLSPSEKTNLKNLGSWLGSITLLRNKPITTLQVSFKDLLLEGIDSGRIDRV 1005
Query: 208 IVICCKIMGNQNSCCCYRSPSPIRKDIVKL 297
+ CK++ +S ++ P+P I+KL
Sbjct: 1006 LPFVCKVLEKASSSVIFKPPNPWLMGILKL 1035
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 724 QIYKSAYALDC-IYHSHHSHLLCSKDEVSHQK 632
Q KS Y C +YH H+SHL VS+ K
Sbjct: 215 QNLKSLYVELCLVYHFHNSHLGMDSSTVSNLK 246
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 700 LDCIYHSHHSHLLCSKDE 647
+D IYHS H H+ K+E
Sbjct: 93 IDTIYHSLHPHIALEKEE 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,654
Number of Sequences: 5004
Number of extensions: 68331
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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