Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A09
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597... 59 5e-09
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 48 1e-05
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473... 30 2.8
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 29 3.7
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 29 4.9
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 29 4.9
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 4.9
02_05_0887 + 32516255-32517292 29 4.9
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 29 6.5
08_01_0446 - 3945133-3945156,3945250-3945290,3945478-3945559,394... 28 8.6
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 28 8.6
>04_04_1698 -
35458500-35458547,35458919-35458988,35459626-35459759,
35460671-35460712,35460786-35460824
Length = 110
Score = 58.8 bits (136), Expect = 5e-09
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 458 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 631
+G+R V G K G + ++G + G W G+ DEP+GK+DG V G+R+F+CP+ G
Sbjct: 28 VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECPQGHGA 87
Query: 632 FSR 640
R
Sbjct: 88 IVR 90
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 48.0 bits (109), Expect = 1e-05
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +2
Query: 449 SFIIGERVWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPI-GKNDGSVAGVRYF-QCP 616
+F +G+RV G + G + Y+G PG+W G+ D G++DGS+AG RYF
Sbjct: 5 AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAG 64
Query: 617 EKRGVFSRLTRLT 655
E+ F+R T L+
Sbjct: 65 ERSASFARPTALS 77
>01_01_0628 -
4731052-4731601,4731825-4732782,4733143-4733953,
4734038-4734241,4734695-4734802,4735930-4736369,
4736463-4736541
Length = 1049
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 658 SSEPSQSRKHTSFLWTLKITNTCH 587
SS+ S H LWTLK N+CH
Sbjct: 502 SSKKEVSIVHNIILWTLKFANSCH 525
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 666 SLYTHRTMHRPCRMRGAFSNDLLPA-RLVPSGPSRQMEVFAVLS 794
S+ T M R+ A + LLP+ +L+P+ P+ ME++ VLS
Sbjct: 507 SIRTAGVMSPDSRIEEALGSCLLPSLQLIPANPAVDMEIWGVLS 550
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 146 ENHKMPVETKISFSDGSSTDTLRKLSD 226
E ++ P T +S SDG+STD + K SD
Sbjct: 1237 EANQKPENTTLSCSDGTSTDVIDKQSD 1263
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 707 AGSVFERPPSGAARPKRTLSPNGSIRSIVSSKMNASISTTTNGDIRTGDRVIVS 868
A SV RPP G+AR + SP G + + ++S S D + ++++
Sbjct: 18 AASVLRRPPRGSARREEESSPEGVVGYVELIGGDSSSSAAMGEDTQEAKALMIA 71
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 594 PATDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPT 475
P T+P+ P + T+PA +P N V+P P P T
Sbjct: 246 PVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPAT 285
>02_05_0887 + 32516255-32517292
Length = 345
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 786 LRILPFGERVRLGRAAPEGGRSKTLPAS---DTGDASCGVCI 670
LR P+ +A E R KTLPA+ D DA+C VC+
Sbjct: 15 LRSAPYPIPSYRWKAMKESNRKKTLPAAQKMDWEDANCSVCM 56
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 370 LPKSIHRSSAERTAGGCFAICTRFI 296
LPK H S A TAGGC +I T F+
Sbjct: 420 LPKEYH-SIAHCTAGGCSSIATSFV 443
>08_01_0446 -
3945133-3945156,3945250-3945290,3945478-3945559,
3945663-3945706,3945849-3945909
Length = 83
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 10 RPIDTTRASASRRSPPQTTL 69
RPIDT RAS RR P T++
Sbjct: 48 RPIDTRRASNDRRGPDATSI 67
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 577 VFTNWLVEYYPSPLSGSKLRFSDISDLSRLRTAYPNTFTNNEAIS 443
+ T+WL S +SG S + L LR +P++ T E IS
Sbjct: 254 IVTDWLAAVMDSSMSGDLKTMSYMQGLIVLRQHFPDSETKREFIS 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,002,982
Number of Sequences: 37544
Number of extensions: 556162
Number of successful extensions: 1707
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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