Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A06
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   7.5  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   7.5  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.9  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +3

Query: 189 VPKTTAVVPXCSGARSAASEAQARNGPRQSASFTLNLXRGRFEPTQVFPFPEPLSDDQRQ 368
           +P T    P  +   + ASE +   GP + ++ T N+ +   +     P  + ++D   +
Sbjct: 381 IPTTEEHFPATTEEVAPASEEKPATGPAEESTSTQNVEQASTQNDNGTPIGQ-IADAIEE 439

Query: 369 MLQELVPPVEKFFQEVNDPAKND 437
            ++     VE+ F E  D A  D
Sbjct: 440 DVKGTAQSVEQAFIEETDIALPD 462


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 381 LVPPVEKFFQEVNDPAKNDENSXIEEGT 464
           LVPP  KF    N P  + E+  IE+G+
Sbjct: 115 LVPPDMKFDPTANPPNYSGEDQVIEKGS 142


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 535 DSPRPPSSPGTCSPXAPRSH 476
           D  R PSSP T  P   RSH
Sbjct: 881 DLERQPSSPDTVHPGIKRSH 900


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 6   LFPNFKHYKLIRNIVIPKFAFRFRMQLQNLSKTDYF 113
           LFP   H+  +    IPK A  F   + NL K  Y+
Sbjct: 67  LFPKKAHFDAVALPPIPKGAPNFLADVLNLLKKKYY 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,684
Number of Sequences: 5004
Number of extensions: 44046
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)