Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A06
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 41 0.001
01_02_0013 + 10162478-10163581 31 0.83
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334... 30 1.5
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 29 4.4
06_01_0851 - 6477629-6478810 29 4.4
07_03_1157 - 24419157-24419948 28 7.7
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 28 7.7
01_06_0693 - 31280108-31281271 28 7.7
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 28 7.7
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = +3
Query: 348 LSDDQRQMLQELVPPVEKFFQEVNDPAKNDENSXIEEGTVAGLW----DLGAXGLQVPGE 515
L DD ++ +E V KF QE P ++ LW D GL P E
Sbjct: 30 LFDDTQEQFKE---SVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEE 86
Query: 516 LGGLGLSNTXYARLVEVVGAHXLGVGITLXAHQSIGFKGILLXGNPQQK 662
GG+GL + +E + VG++ AH ++ ++ G+P QK
Sbjct: 87 YGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 135
>01_02_0013 + 10162478-10163581
Length = 367
Score = 31.1 bits (67), Expect = 0.83
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 354 DDQRQMLQELVPPVEKFFQEVNDPAK----NDENSXIEEGTVAGLWDLGAXGLQVPGELG 521
DD+ + + ++ P E F E A DE S +E + G+ L QV GELG
Sbjct: 22 DDEAEGTKPILAPHELFHHEAPAAAAATVVRDEES--DEEPIVGIVGLEMSDFQVIGELG 79
Query: 522 GLGLSNTXY-ARL 557
G GL N Y ARL
Sbjct: 80 G-GLYNVVYKARL 91
>03_01_0432 +
3339235-3339915,3340313-3340561,3341071-3341139,
3341292-3341414,3341526-3341738
Length = 444
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 279 HSVSVRFELAPLMRQIELRCKXEPPQSFW 193
HS + RF +APL+R+ R + P S W
Sbjct: 104 HSYAARFAIAPLLRRTVTRAWYDHPASLW 132
>10_08_1023 -
22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 523 PPSSPGTCSPXAPRSHSPATVPSSIXEFSSFLAGSF 416
PP +P SP +PR+ S ++ S+ E +LA F
Sbjct: 12 PPPAPDASSPSSPRASSASSSSSAAAEEPEYLARYF 47
>06_01_0851 - 6477629-6478810
Length = 393
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 480 DLGAXGLQVPGELGGLGLSNTXYARLVEVVG 572
D+G+ + ELGGLGLS + ARL+ + G
Sbjct: 111 DVGSSLARRVDELGGLGLSRSQIARLLPLAG 141
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 605 PERDADAEXVGPDHLDEPRVXRVGQPQAAELPRHLQPXRAEIPQ 474
P+ + P+ L P V + P ELP+H +P +P+
Sbjct: 133 PKHEEPPHPAVPE-LPHPAVPEIPHPAVPELPKHEEPPHPVVPE 175
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 532 SPRPPSSPGTCSPXAPRSHSPATVP 458
SP P SSP T S A S +P+ P
Sbjct: 77 SPTPSSSPSTASAAARSSRTPSAAP 101
>01_06_0693 - 31280108-31281271
Length = 387
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 231 RSAASEAQARNGPRQSASFTLNLXRGRFEPTQVFPFPEPLSDDQRQMLQELVPP 392
R++A A + A FT L RG + + + + +S RQML+E VPP
Sbjct: 163 RASADPAARPSADTYHALFTALLSRGGGDTMVHYMYMDTVSALFRQMLEEGVPP 216
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 529 PRPPSSPGTCSPXAPRSHSPATV-PSSIXEFSSFLAGSF 416
P P S P + S +P S PA+V P+++ S FL +F
Sbjct: 29 PSPHSEPPSASAASPLSPVPASVPPTALIPGSRFLVDAF 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,424
Number of Sequences: 37544
Number of extensions: 325183
Number of successful extensions: 1294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -