Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A05
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.025
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.033
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.31
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 29 0.71
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 28 1.6
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.2
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.0
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.6
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 6.6
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.6
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 8.7
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 8.7
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.025
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 640 KISL 651
K L
Sbjct: 196 KAML 199
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.5 bits (73), Expect = 0.033
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
Query: 631 EEKKISLSIRIKPLTIEGLSVDNSDRRPRNSGSASSNSXP 750
E K ++K T E N+ R+ G ++ P
Sbjct: 679 ENAKREAEEKVKRETEE-----NAKRKAEEEGKREADKNP 713
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 631 EEKK 642
E+ K
Sbjct: 631 EKAK 634
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
+ EEK +R E + KR+A A ++A + ++K++ A+ E K K + E
Sbjct: 580 EAEEKAKREAEEKAKREAEENAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 638
Query: 631 EEKK 642
E+ K
Sbjct: 639 EKAK 642
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
+ EEK +R E KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 646
Query: 631 EEKK 642
E+ K
Sbjct: 647 EKAK 650
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 630
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 604 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 662
Query: 631 EEKK 642
E K
Sbjct: 663 ENAK 666
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 463 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 636
E++ RLE E KR+A QA ++A + +K K E + + E N +E E+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKA 609
Query: 637 KK 642
K+
Sbjct: 610 KR 611
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 621
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 622 QLEEEKKISLSIRIKPLT 675
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 544 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGLSVDNSDRRPRN 720
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L S RP+N
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKALI---SKERPQN 543
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 478 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 642
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 643 ISLSIRIKPLTIEGLSV 693
+ ++IK + EGLS+
Sbjct: 83 VEREMKIKAFSKEGLSI 99
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 124 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVESA 20
CW I G S L+ AL+L PA+ NV S+
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLSS 326
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 19 PRTPHSNVAVLPVQEPV 69
PR PHS + +LP + PV
Sbjct: 357 PRYPHSQMVMLPARSPV 373
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 637 KKISLSIRI 663
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 633
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 634 EKKI 645
+++I
Sbjct: 192 DEEI 195
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS-ENFGLSNAQLERNKTKEQLEE 633
+E+ Q + +K + + + A+K + T +KK+ +++ ++E + K L +
Sbjct: 390 LEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEE-QLKFLLNK 448
Query: 634 EKKISLSIRIKPLTIEGLSVDNS 702
EKK+ S I+ L+ E +NS
Sbjct: 449 EKKLKKS--IEALSFEKSEAENS 469
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 700 SCRRRDPRWSAA*CGW 653
SCRR+D RW AA W
Sbjct: 139 SCRRKDNRWFAAINKW 154
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 572 SLFFWMVKLGPVLLASFMAWSIAW 501
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.128 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,692
Number of Sequences: 5004
Number of extensions: 29415
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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