Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_A05
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 44 9e-05
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 44 9e-05
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 33 0.22
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 33 0.22
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 33 0.29
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 32 0.50
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 32 0.50
AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical ... 32 0.50
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 31 1.2
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 29 2.7
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 29 3.5
AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical ... 29 3.5
Z83108-6|CAB05512.1| 833|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z50070-13|CAA90402.1| 833|Caenorhabditis elegans Hypothetical p... 29 4.7
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 4.7
Z70309-5|CAB54290.2| 402|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70309-4|CAA94359.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 6.2
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 6.2
AL117195-7|CAB55028.1| 158|Caenorhabditis elegans Hypothetical ... 28 6.2
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 28 6.2
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr... 28 8.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.1
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 44.4 bits (100), Expect = 9e-05
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Frame = +1
Query: 211 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 390
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 391 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 570
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 571 ENFGLSN-------AQLERNKTKEQLEEEKKISLS 654
E+ G+ + A+ E TKEQ EE K ++++
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 44.4 bits (100), Expect = 9e-05
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Frame = +1
Query: 211 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 390
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 391 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 570
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 571 ENFGLSN-------AQLERNKTKEQLEEEKKISLS 654
E+ G+ + A+ E TKEQ EE K ++++
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLE- 630
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 648 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 702
Query: 631 EEKKISLSIRIKPLTIEGLSVDNSDR 708
+ +K+S I K +E L + D+
Sbjct: 703 QVEKVSNEISEKQQEVENLMAEMRDK 728
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLE- 630
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 631 EEKKISLSIRIKPLTIEGLSVDNSDR 708
+ +K+S I K +E L + D+
Sbjct: 705 QVEKVSNEISEKQQEVENLMAEMRDK 730
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLE- 630
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 631 EEKKISLSIRIKPLTIEGLSVDNSDR 708
+ +K+S I K +E L + D+
Sbjct: 705 QVEKVSNEISEKQQEVENLMAEMRDK 730
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENF-GLSNAQLERNKTKEQLEEEKK 642
KR+ ++ AEK ++A L+ K++SK+ +KK +++ K +E+KK
Sbjct: 323 KRETMKRAEKMKEAELKKKKESSKSKEEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKK 382
Query: 643 ISLSIRIKPLTIEGLSVDNSDRRPRNSGS 729
++ P + + SD+ GS
Sbjct: 383 SEKKVKEVPEKAQKSKKEKSDKFVFEEGS 411
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 32.3 bits (70), Expect = 0.38
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
+E+K++ +EE EKKR + + A IQ K + Q R++ KE L++
Sbjct: 869 LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQKR 926
Query: 637 KKISLSIRIKPLTIEGLSVDNSDR 708
+K+ K + E ++ NS R
Sbjct: 927 QKLE-----KDIAKETANISNSGR 945
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER-NKTKEQLE 630
D EEK+++ E +KK+ A + KDA +K ++ G + + K K+ E
Sbjct: 411 DAEEKKKKDAEEKKKKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDAE 470
Query: 631 EEKKIS 648
E+KK++
Sbjct: 471 EKKKVA 476
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
D EEK+++ E EKK+ A + KDA +K + + + + K+ EE
Sbjct: 419 DAEEKKKKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDAEEKKKVAEE 478
Query: 634 EKK 642
EKK
Sbjct: 479 EKK 481
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
+ EK Q L+ A+ + + +K+ T +++ + Q+ RN K+ +E++
Sbjct: 463 VREKEQELDRAKIRLLSHPDVVKEKEMTEKIEQGERERQRLAEHIDQVRRNAEKDAMEQQ 522
Query: 637 KKISLSIRIKPLTIEGLSVDNSDR 708
K + TIE L + SDR
Sbjct: 523 KTYQNEMTQLKATIENLQKELSDR 546
>AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical
protein Y92H12A.4 protein.
Length = 782
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTG-PNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
I K++ +E + + + A+ + T P+F+ +K S + + ++E+ K K+ +EE
Sbjct: 497 IRPKKKSTDEEKAIKSSSEPALSEQKSTEKPSFSTEKLSSD--SATTKIEKEKLKKAIEE 554
Query: 634 EKKISLSIRIKPL 672
+++ L++ IK L
Sbjct: 555 QEEQELNVLIKQL 567
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/88 (20%), Positives = 48/88 (54%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 633
D+E +++LEE+E ++ +LQ+ K + + +++ ++ +++ + K + Q+ E
Sbjct: 1397 DVEHLQKQLEESEVAKERILQSKKKIQQELEDSSMELENVRASHRDSEKRQKKFESQMAE 1456
Query: 634 EKKISLSIRIKPLTIEGLSVDNSDRRPR 717
E+ ++++ L + +S + DR R
Sbjct: 1457 ER---VAVQKALLDRDAMSQELRDRETR 1481
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKK 642
E+R++LEE+E RQA L +++ E L +LE K + + +++
Sbjct: 337 ERRRKLEESETARQAELDRQATIYAEQERMAMERNRE---LERIRLEEKKRENERVRQEE 393
Query: 643 ISLSIRIKPLTIEGLSVDNSDRRPR 717
I++ I K +E L ++ + R
Sbjct: 394 IAMEIS-KIRELERLQLERQRKNER 417
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
EE+ R++E E+K++ +L+ ++A K + K+E E K K++LEEE+
Sbjct: 531 EEEEARIKEEEEKQRKILE--EEARKKQEEEEARLKAEE---ELKIYEEEKRKKELEEER 585
Query: 640 KISLSIRIK 666
K + IK
Sbjct: 586 KKKEELEIK 594
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKK 642
K+Q EEA K + L+ ++ + +KK E + + E K K+ LEEEKK
Sbjct: 554 KKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKR-KAEEEKKKKALEEEKK 611
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
E++R+ LEE +K+Q +A A + + +K+ + + E + K + EEEK
Sbjct: 542 EKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEEEK 601
Query: 640 K 642
K
Sbjct: 602 K 602
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 621
EEK Q++ E E+K Q +L K+ + + + I++K E N Q R K E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267
Query: 622 Q 624
Q
Sbjct: 268 Q 268
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 636
+E+ +L + +Q +++ +T T +++S + +SN QLE + +E LEEE
Sbjct: 1301 LEDAEAQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQLECEQFRESLEEE 1360
Query: 637 KKISLSIR 660
+ ++
Sbjct: 1361 QDAKTDVQ 1368
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
E+K ++ E+ ++K + KD K+G +K+ + + + K +E+ E+EK
Sbjct: 121 EKKEEKKEDEKEKGDDKKEDEKDDKKSGSKDAEKKEEKKEEEKKEEKKEEKKEEKKEDEK 180
Query: 640 K 642
K
Sbjct: 181 K 181
>AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical
protein C01B12.2 protein.
Length = 374
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQLE 630
E ++R EEAE+K Q A+K +T N TIQ K+ L +E + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNLI 279
Query: 631 EEKKISLSIR--IKPLTIEGLS 690
+ + S I+ L + GLS
Sbjct: 280 SGRDFAASSSKIIQVLQVLGLS 301
>Z83108-6|CAB05512.1| 833|Caenorhabditis elegans Hypothetical
protein F43G6.9 protein.
Length = 833
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTG-PNFTIQKKSENFGLSNAQLER--NKTKEQLEE 633
E+++R++ E K+ + K A+ G P+ + + AQ+E N+TK+ +E
Sbjct: 536 ERQERIDRGEDKKLRQTLSDKFATSLGLPSKSSTHNPRHVLDMKAQVESVDNQTKKLSDE 595
Query: 634 EKKISLSIRIKPLTI 678
E+KI+++ +++ + +
Sbjct: 596 ERKIAVAKKLRTMLL 610
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 550 FTIQKKSENFGLSNA---QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDNS 702
FTI+KK ++G +A +R+ + ++EE + L + I GL DNS
Sbjct: 176 FTIRKKLHSYGFLSALAAHADRSPQSKAIDEEVNMYLQSESRDARIMGLHDDNS 229
>Z50070-13|CAA90402.1| 833|Caenorhabditis elegans Hypothetical
protein F43G6.9 protein.
Length = 833
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTG-PNFTIQKKSENFGLSNAQLER--NKTKEQLEE 633
E+++R++ E K+ + K A+ G P+ + + AQ+E N+TK+ +E
Sbjct: 536 ERQERIDRGEDKKLRQTLSDKFATSLGLPSKSSTHNPRHVLDMKAQVESVDNQTKKLSDE 595
Query: 634 EKKISLSIRIKPLTI 678
E+KI+++ +++ + +
Sbjct: 596 ERKIAVAKKLRTMLL 610
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 606
D E+ ++ ++E EK + L S GP T +K+ +NF + + R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/54 (22%), Positives = 31/54 (57%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 621
+EK+Q+L+E EK+R+ + Q ++ ++ +E+ +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269
>Z70309-5|CAB54290.2| 402|Caenorhabditis elegans Hypothetical
protein R102.5b protein.
Length = 402
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 583 LSNAQLERNKT----KEQLEEEKKISLSIRIKPLTIEGLSVDNSDRRPRNSGSASSNS 744
LSN + E +T E E++ I SIRI+P++I+ + S R P GS + S
Sbjct: 8 LSNDEFEIIETFDPETEDREDQWSIQQSIRIEPISIQMPNTLQSQRAPSPVGSKAPES 65
>Z70309-4|CAA94359.2| 388|Caenorhabditis elegans Hypothetical
protein R102.5a protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 583 LSNAQLERNKT----KEQLEEEKKISLSIRIKPLTIEGLSVDNSDRRPRNSGSASSNS 744
LSN + E +T E E++ I SIRI+P++I+ + S R P GS + S
Sbjct: 8 LSNDEFEIIETFDPETEDREDQWSIQQSIRIEPISIQMPNTLQSQRAPSPVGSKAPES 65
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFT--IQKKSENFGLSNAQLERNKTKEQLEEE 636
+K + L E + Q ++A+ A + + IQ+ N +A+LER +E++ EE
Sbjct: 373 KKAESLPSVEAELQQRMEALTAAEQKSVSAEERIQRLDRNIQELSAELERAVQRERMNEE 432
Query: 637 KKISLSIRIKPLTIE 681
LS + L E
Sbjct: 433 HSQRLSSTVDKLLSE 447
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 203 KRVREIQNSSSVKTRSGRTWMNS*RNTSTNGASSGPRRRMSSNALKRSRPSAR 361
KR R +SSS + S + +S + S++ +SSG R R S + +RP AR
Sbjct: 9 KRARSSSSSSSSSSGSSSSGSSSSGSRSSSSSSSG-RSRSRSPRRRDTRPPAR 60
>AL117195-7|CAB55028.1| 158|Caenorhabditis elegans Hypothetical
protein Y57A10A.9 protein.
Length = 158
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFT--------IQKKSENFGLSNAQLERNKTK 618
+K +RL E ++ + Q M++ASK F +QK++ENF + Q + +
Sbjct: 84 QKLRRLAAQELEQDVVEQKMREASKNKVLFANVLNIFADLQKEAENFSKTTKQSSTSPSS 143
Query: 619 EQLEEEKKISLS 654
EE S S
Sbjct: 144 SSSSEESSASSS 155
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFT--IQKKSENFGLSNAQLERNKTKEQLEEE 636
+K + L E + Q ++A+ A + + IQ+ N +A+LER +E++ EE
Sbjct: 373 KKAESLPSVEAELQQRMEALTAAEQKSVSAEERIQRLDRNIQELSAELERAVQRERMNEE 432
Query: 637 KKISLSIRIKPLTIE 681
LS + L E
Sbjct: 433 HSQRLSSTVDKLLSE 447
>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 586 SNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDNSDRRPRNS 723
S+ +RN E LEEE + S SIRI I G + P N+
Sbjct: 296 SDGWADRNDVVEDLEEEAEGSFSIRIHAPKIPGFRQYYTALHPENN 341
>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 586 SNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDNSDRRPRNS 723
S+ +RN E LEEE + S SIRI I G + P N+
Sbjct: 296 SDGWADRNDVVEDLEEEAEGSFSIRIHAPKIPGFRQYYTALHPENN 341
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
K+Q +A+K L+A A K +I K + FG E + T EQ EEK
Sbjct: 11626 KKQDENDAKKSVSKNLKA--GAKKDSDTLSITSKKDKFGKRQDSREASATVEQQGEEK 11681
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 639
K+Q +A+K L+A A K +I K + FG E + T EQ EEK
Sbjct: 11626 KKQDENDAKKSVSKNLKA--GAKKDSDTLSITSKKDKFGKRQDSREASATVEQQGEEK 11681
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENF------GLSNAQLERNKTKEQL 627
KRQ LE +KRQ +K++ K G + KKS+ GL + L N KE +
Sbjct: 81 KRQVLEARRQKRQNDDDILKNSKKMG-KLKVLKKSQKIREIASGGLDDVAL-ANAIKEVI 138
Query: 628 EEEKKISLS 654
KK+ L+
Sbjct: 139 SPSKKVILN 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.128 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,284
Number of Sequences: 27780
Number of extensions: 175624
Number of successful extensions: 745
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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