Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A04
         (578 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052806-1|AAH52806.1|  128|Homo sapiens MRPL55 protein protein.       34   0.42 
AY358771-1|AAQ89131.1|  164|Homo sapiens AAVG5835 protein.             34   0.42 
AL136379-5|CAI23117.1|  164|Homo sapiens mitochondrial ribosomal...    34   0.42 
AL136379-4|CAI23118.1|  125|Homo sapiens mitochondrial ribosomal...    34   0.42 
AL136379-3|CAI23116.1|  128|Homo sapiens mitochondrial ribosomal...    34   0.42 
AL136379-2|CAI23115.1|   76|Homo sapiens mitochondrial ribosomal...    34   0.42 
BC032477-1|AAH32477.1|  294|Homo sapiens TMC4 protein protein.         31   3.9  
BC025323-1|AAH25323.1|  706|Homo sapiens transmembrane channel-l...    31   3.9  
AY236492-1|AAP69870.1|  712|Homo sapiens transmembrane channel-l...    31   3.9  
AY263166-1|AAP78781.1|  706|Homo sapiens TMC4 protein protein.         29   9.0  

>BC052806-1|AAH52806.1|  128|Homo sapiens MRPL55 protein protein.
          Length = 128

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 YSRMYYPTTIALPDGSTINVRYHEPR 313
           Y+R+Y P  +   DGSTI++RY EPR
Sbjct: 48  YARLY-PVLLVKQDGSTIHIRYREPR 72


>AY358771-1|AAQ89131.1|  164|Homo sapiens AAVG5835 protein.
          Length = 164

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 YSRMYYPTTIALPDGSTINVRYHEPR 313
           Y+R+Y P  +   DGSTI++RY EPR
Sbjct: 84  YARLY-PVLLVKQDGSTIHIRYREPR 108


>AL136379-5|CAI23117.1|  164|Homo sapiens mitochondrial ribosomal
           protein L55 protein.
          Length = 164

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 YSRMYYPTTIALPDGSTINVRYHEPR 313
           Y+R+Y P  +   DGSTI++RY EPR
Sbjct: 84  YARLY-PVLLVKQDGSTIHIRYREPR 108


>AL136379-4|CAI23118.1|  125|Homo sapiens mitochondrial ribosomal
           protein L55 protein.
          Length = 125

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 YSRMYYPTTIALPDGSTINVRYHEPR 313
           Y+R+Y P  +   DGSTI++RY EPR
Sbjct: 45  YARLY-PVLLVKQDGSTIHIRYREPR 69


>AL136379-3|CAI23116.1|  128|Homo sapiens mitochondrial ribosomal
           protein L55 protein.
          Length = 128

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 YSRMYYPTTIALPDGSTINVRYHEPR 313
           Y+R+Y P  +   DGSTI++RY EPR
Sbjct: 48  YARLY-PVLLVKQDGSTIHIRYREPR 72


>AL136379-2|CAI23115.1|   76|Homo sapiens mitochondrial ribosomal
           protein L55 protein.
          Length = 76

 Score = 33.9 bits (74), Expect = 0.42
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 YSRMYYPTTIALPDGSTINVRYHEPR 313
           Y+R+Y P  +   DGSTI++RY EPR
Sbjct: 48  YARLY-PVLLVKQDGSTIHIRYREPR 72


>BC032477-1|AAH32477.1|  294|Homo sapiens TMC4 protein protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   QSVKWMRIGNF-CANFIFYNNITFMITVFYLKKLTLF 113
           Q+V W  +G+F C      N + F++ +FYLKKLTLF
Sbjct: 121 QTVVW--VGSFFCPLLPLLNTVKFLL-LFYLKKLTLF 154


>BC025323-1|AAH25323.1|  706|Homo sapiens transmembrane channel-like
           4 protein.
          Length = 706

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   QSVKWMRIGNF-CANFIFYNNITFMITVFYLKKLTLF 113
           Q+V W  +G+F C      N + F++ +FYLKKLTLF
Sbjct: 533 QTVVW--VGSFFCPLLPLLNTVKFLL-LFYLKKLTLF 566


>AY236492-1|AAP69870.1|  712|Homo sapiens transmembrane channel-like
           protein 4 protein.
          Length = 712

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   QSVKWMRIGNF-CANFIFYNNITFMITVFYLKKLTLF 113
           Q+V W  +G+F C      N + F++ +FYLKKLTLF
Sbjct: 539 QTVVW--VGSFFCPLLPLLNTVKFLL-LFYLKKLTLF 572


>AY263166-1|AAP78781.1|  706|Homo sapiens TMC4 protein protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   QSVKWMRIGNF-CANFIFYNNITFMITVFYLKKLTLF 113
           Q+V W  +G+F C      N + F++ +FYLKK+TLF
Sbjct: 533 QTVVW--VGSFFCPLLPLLNTVKFLL-LFYLKKVTLF 566


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,534,690
Number of Sequences: 237096
Number of extensions: 950775
Number of successful extensions: 1248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)