Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_A04
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.        27   9.6  
U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4...    27   9.6  

>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 36  FCANFIFYNNITFMITVFYLKKLTLFVNYKNDLQII 143
           F    I Y N+  + T+FYLKK+     +K DL ++
Sbjct: 14  FLCETICYLNLRLLFTIFYLKKIA----FKPDLTLV 45


>U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 SNYKGALINSLTKRYLNNNIACI 213
           S++ G LI S    Y NNNI+C+
Sbjct: 85  SSFNGFLIPSQPSSYNNNNISCV 107


>U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4,
           isoform a protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 SNYKGALINSLTKRYLNNNIACI 213
           S++ G LI S    Y NNNI+C+
Sbjct: 80  SSFNGFLIPSQPSSYNNNNISCV 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,490,826
Number of Sequences: 27780
Number of extensions: 165994
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)