Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P24
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.071
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.071
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 235  SFEGIPYSSSSTPTHVGHTGFPSMA*KDFPLTGFWQSLQTK 357
            S EG+P   ++ P   G +G  S   K  P+ GF +S  +K
Sbjct: 1100 SSEGVPLKGTAVPPPSGSSGPGSTGSKSPPVAGFEESPHSK 1140


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 380 NTQWHPDCFVCKDCQNPVKGKSFY 309
           N ++ P C +   C N + G  FY
Sbjct: 379 NDEYLPGCAMVDSCSNILTGDQFY 402


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 333 SRQREVLLCHGREAGMPNMRW 271
           S+Q   LLC  +    P+ RW
Sbjct: 246 SKQNVALLCPAQGFPSPSFRW 266


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 454 ITLTCSPPNAVVAIS 410
           +T TCSPP   + +S
Sbjct: 126 LTNTCSPPQGQLVLS 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,666
Number of Sequences: 336
Number of extensions: 2545
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)