Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P24
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      50   3e-07
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    47   1e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    33   0.018
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   0.68 
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   8.4  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -2

Query: 482 RDGKPYCRADYFDMFAPXCGGCNKPIMXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAM 303
           RD   +C+  Y + +A  C  C KPI+   +   + ++H  C+ C  C   +  + ++ +
Sbjct: 360 RDDLYWCQTCYDNKYAVKCKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMI 419

Query: 302 EGKPVCPTCVGV 267
           E  P+C  C  +
Sbjct: 420 ENTPICRPCKAI 431



 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 494 GFHXRDGKPYCRADYFDMFAPXCGGCNKPIMXNYISALNTQWHPDCFVCKDC 339
           GF+ R+GK YC  DY + F+P C  C  PI    +   N  +H +   C  C
Sbjct: 296 GFYYREGKFYCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCAGC 347



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 428 CGGCNKPIMXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVC 285
           CGG  +      ISA   + HP CF C  C   ++   FY  EGK  C
Sbjct: 261 CGGSLRA--GRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYC 306


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 470 PYCRADYFDMFAPXCGGCNKPIMXNYISALNTQWHPDCFVCKDCQNPV-KGKSFYAMEGK 294
           P C  DYF      C  C   +   YI+ALN ++H + F C  C        S+Y  EGK
Sbjct: 166 PLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGK 225

Query: 293 PVC 285
             C
Sbjct: 226 VYC 228



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 497 EGFHXRDGKPYCRADYFDMFAPXCGGCNKPIMXNYI----SALNTQWHPDC 357
           + ++  +GK YC   Y  +FA  C GC+ PI+  ++    + ++  WH  C
Sbjct: 217 DSYYEYEGKVYCHYHYSTLFAARCCGCDGPILRQFVEVYRNGVSQNWHVPC 267



 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 428 CGGCNKPIMXNYISALNTQWHPDCFVCKDCQNPVKGKSF 312
           C  C + I   Y+ AL   +H +CF C DC + V  K F
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFF 154


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -2

Query: 371 WHPDCFVCKDCQNPVKGKS---FYAMEGKPVCPTC 276
           WH DCF C  C   ++          +G+PVC +C
Sbjct: 40  WHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74



 Score = 31.5 bits (68), Expect = 0.073
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = -2

Query: 479 DGKPYCRADYFDMFAPXCGGCNKPIMXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAME 300
           DG+P C +      A  C  C   I    + +    +H +CF C DC+  +   +F    
Sbjct: 66  DGRPVCSS-----CAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDN 120

Query: 299 GKPVCPTC 276
               C  C
Sbjct: 121 RTIFCNDC 128


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -2

Query: 371 WHPDCFVCKDCQNPV--KGKSFYAMEGKPV-CPTCVGV 267
           WH DCF C +C   +    + F   + K + C  CV +
Sbjct: 44  WHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLCVDI 81


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 180 YWSIAVKKLGRAFVLSGEVIR 242
           YW    +KLG  +V SG ++R
Sbjct: 324 YWKEVAEKLGFLYVASGPLVR 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,635
Number of Sequences: 5004
Number of extensions: 40601
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)