Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_P24
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 47 7e-06
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 46 2e-05
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 44 9e-05
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 42 3e-04
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 35 0.042
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 34 0.055
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 33 0.17
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 33 0.17
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 32 0.29
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 30 1.2
12_02_0842 - 23588826-23589198,23589548-23590203 29 2.7
03_05_0768 + 27575303-27575980,27576427-27576543 28 3.6
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 28 3.6
12_02_0848 + 23636478-23638058 28 4.8
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 28 4.8
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 27 6.3
02_05_0093 + 25753021-25753061,25753159-25753402,25753843-257539... 27 6.3
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 27 6.3
05_03_0157 - 9027777-9027862,9028142-9029357 27 8.4
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 47.2 bits (107), Expect = 7e-06
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTC 276
C GC PI ++S +++ WHP CF C C P+ F E +P +C
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSC 308
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 491 FHXRDGKPYCRADYFDMFAPXCGGCNKPIMXNYISALNTQWHP 363
F + +PY ++ Y D F P C C I N + + HP
Sbjct: 296 FAMHEDQPYHKSCYKDFFHPKCDVCKNFIPTNRNGLIEYRAHP 338
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 46.0 bits (104), Expect = 2e-05
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPVK 324
CGGC I +Y+S L WHP CF C C++P++
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIR 149
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 43.6 bits (98), Expect = 9e-05
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTC 276
C GC+ I ++S + WHP+CF C C P+ F P TC
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTC 609
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 41.9 bits (94), Expect = 3e-04
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPV 327
C GC PI ++S +++ WHP CF C C P+
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPI 212
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 34.7 bits (76), Expect = 0.042
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 428 CGGCNKPIMX-NYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVC 285
C GCNK + ++ NT +H CF C + ++ A EGK C
Sbjct: 110 CVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYC 158
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 34.3 bits (75), Expect = 0.055
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 279
C C+K + + ++A + +H CF C C+ + S+ +M+G C T
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 60
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 279
C C+K + + ++A +H CF C C+ + S+ +M+G C T
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 428 CGGCNKPI-MXNYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 279
C C+K + + ++A +H CF C C+ + ++ +M+G C T
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 60
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 428 CGGCNKPIMX-NYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVC 285
C C K + + +S +H CF C+ C++ + ++ ++EG P C
Sbjct: 9 CKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYC 57
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 334 IPSKGSPSMPWKGSRYAQHALESMMMNKECLRMTSPLRTNALPNFFT 194
IP +P +P G+R Q L +M + +RM SP+R P FT
Sbjct: 298 IPVFSAPPLPPPGARTQQ--LPPLMSHPPPIRMASPVRIRPAPPLFT 342
>12_02_0842 - 23588826-23589198,23589548-23590203
Length = 342
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -3
Query: 415 ISP*WXTISQRSTPSGIQTVSFARTARIPSKGSPSMPWKGSRYAQHALESMMMNKECLR 239
I P W + S S+ S T+S A A P+ +P W G + + +M EC R
Sbjct: 164 ILPPWMSSSPSSSSSPSVTLSLASAAVAPAPAAPPPTWGGGGGGEVVVAELM---ECCR 219
>03_05_0768 + 27575303-27575980,27576427-27576543
Length = 264
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 408 HNGKLYLSA--QHPVASRLFRLQGLPESRQREV 316
H GKL + A Q P SR GLPE +RE+
Sbjct: 153 HEGKLAVPAPEQEPATSRSAAFAGLPEMERREL 185
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 197 KKIGEGIRSEWGGHSKAFLIHHHRLQRMLGIPASLPWHRRTSL*RDSGSPCKRN 358
+K+ G R+ W GH K L + + PA P H +S S SPC+R+
Sbjct: 178 QKLRPGSRTAWAGHPKWALPVAYEM------PAPPPPHAASSPPLPSSSPCRRS 225
>12_02_0848 + 23636478-23638058
Length = 526
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 206 GEGIRSEWGGHSKAFLIHHHRLQRMLGIPASLPWHRRTSL 325
G G S+WG S+ L+ L I AS PWHRRT +
Sbjct: 250 GGGEGSQWG--SRLLLLPEAMNMTALVIEAS-PWHRRTDV 286
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 244 GIPYSSSSTPT-HVGHTGFPSMA*KDFPLTGFWQSLQTKQ 360
G YSS P + TGF ++ PLT W + QTK+
Sbjct: 65 GFGYSSMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKE 104
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 243 RHSLFIIIDSNACWAYRLPFHG 308
R LF++IDSNA ++++ F G
Sbjct: 413 RRPLFLVIDSNASYSFKAGFSG 434
>02_05_0093 +
25753021-25753061,25753159-25753402,25753843-25753905,
25753985-25754179,25754489-25754893
Length = 315
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 331 PSKGSPSMPWKGSRYAQHALESMMMNKECLRMTSPLRTNAL 209
P++ +K S+ QHA ++ K +SPLR N +
Sbjct: 225 PARADAFAAYKTSKALQHAYTRVLARKHASSSSSPLRVNCV 265
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 469 PTAGLITLTCSPPNAVVAISP*WXTISQRSTPSGIQTVSFARTA 338
P G I+ +PP+AV + SP + + +TP G T A A
Sbjct: 530 PLLGRISFRSAPPSAVGSRSPSFTIDTNANTPGGGATPGMAAAA 573
>05_03_0157 - 9027777-9027862,9028142-9029357
Length = 433
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 242 KAFLIHHHRLQRMLGIPASLPWHRR 316
+ FL + +++G+P+SLP HRR
Sbjct: 198 RRFLSQTGKWDKLVGLPSSLPLHRR 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,714
Number of Sequences: 37544
Number of extensions: 293983
Number of successful extensions: 698
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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