Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P23
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   0.69 
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   4.9  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    25   4.9  

>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 364 LLPALXTYLVCSVESNYIYIIKYFFNXPFKIWLRYI 257
           L+P + T L+   + N+ Y  + + + PFK WL  +
Sbjct: 307 LIPIIETALLDGRKVNFCYSSRNYVSRPFKQWLEQL 342


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 1   QYYCVVF--GYIRKNIIYSHKIIYSRCLQI*TTFTI 102
           QYY V+   G I KN+ + ++ I++ C++I  ++ I
Sbjct: 426 QYYDVIKLNGTIPKNVDFENQHIFTACVEIYLSYCI 461


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 304 IKYFFNXPFKIWLR 263
           IKY FN P +IWL+
Sbjct: 118 IKYPFNRPVEIWLK 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,602
Number of Sequences: 5004
Number of extensions: 24041
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)