Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P23
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0170 - 32128619-32129647                                         31   0.37 
03_06_0164 - 32106920-32106991,32107309-32107896                       27   3.4  
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319...    27   6.0  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    26   7.9  
07_03_0497 + 18777377-18777592,18777691-18778512                       26   7.9  
03_06_0163 - 32105234-32105977                                         26   7.9  

>03_06_0170 - 32128619-32129647
          Length = 342

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 16  VFGYIRKNIIYSHKIIYSRCLQI*TTFTIYSQTIHKXHYI 135
           V G     ++ S   +Y  CL+I   FTIY  T+HK  ++
Sbjct: 198 VTGAAHVYLVESEDELYMVCLRIDYEFTIYDMTVHKMDFL 237


>03_06_0164 - 32106920-32106991,32107309-32107896
          Length = 219

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 40  IIYSHKIIYSRCLQI*TTFTIYSQTIHKXHY 132
           ++ S   +Y  CL++   FTIY  T+H+  +
Sbjct: 113 LVESEDELYMVCLRLDHDFTIYDMTVHRMDF 143


>05_01_0406 +
           3197189-3197389,3197491-3197628,3198463-3198544,
           3198658-3198734,3198829-3198935,3199367-3199505,
           3200602-3200718,3200850-3200941,3201096-3201162,
           3201249-3201355,3201468-3201546,3201751-3201894,
           3202095-3202235
          Length = 496

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 206 NYIIVYILISCEIFQT 253
           N +IVY+L +CEIF T
Sbjct: 421 NALIVYVLAACEIFPT 436


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 212  IIVYILISCEIFQTNYVTEPYFKWXVKKIFNYINIIRFNT 331
            I+ ++ +  +    NYV   + +  + ++F++INI  FN+
Sbjct: 1423 IVKFLDLLMDTLHENYVPSFFIRKLITQLFSFINIQLFNS 1462


>07_03_0497 + 18777377-18777592,18777691-18778512
          Length = 345

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 71  AAYKSKQHSQFIHKPFTKXII 133
           A  K+K+H+ F+H PFT   I
Sbjct: 31  AGTKTKRHTFFLHNPFTATTI 51


>03_06_0163 - 32105234-32105977
          Length = 247

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 40  IIYSHKIIYSRCLQI*TTFTIYSQTIHKXHYI 135
           ++ S   +Y  CL++   F IY  T+H+  ++
Sbjct: 202 LVESEDELYMICLRLDHDFAIYDMTVHRMDFL 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,103
Number of Sequences: 37544
Number of extensions: 107639
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)