Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P20
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089...    29   2.3  
02_01_0668 - 4969141-4970520,4970597-4971463                           29   4.1  
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     28   7.1  
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     27   9.4  

>05_03_0364 +
           13007002-13007538,13007965-13008393,13008649-13008990,
           13009904-13010035,13010432-13010596
          Length = 534

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 616 VVSXVRSLHKTESFCHLWCLKLTDSFCKRRNNDLILIHVIG*VRSIL 476
           ++  + +LH+  SF   W  + T S  KRR  DL+ I   G V+  L
Sbjct: 340 MIPAIANLHQPASFWETWA-EDTTSILKRRTPDLVAIKETGRVKQAL 385


>02_01_0668 - 4969141-4970520,4970597-4971463
          Length = 748

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +2

Query: 431 DKIIAIRSIKLYCNIKYTSYLANDMDQNQIIVSSFTKTISQLETPKVTKRFSLV*RTNXR 610
           D++IA  +  LY ++ +     +  + +QI V+  T  + Q     +T+RFS V R+N  
Sbjct: 83  DELIANEN-GLYSSLVHLQQTRDSNEIDQICVTGSTSAVEQSNIHIMTRRFSTVSRSNSA 141

Query: 611 DNL 619
            +L
Sbjct: 142 RSL 144


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +2

Query: 158 VANLLTINYINEFNNVI*TDKLYINKGLCGLINLLTINVERNNICMVLKEFISHKLDSM 334
           + NL  +  ++   N+I  D   I + LC L+NL  + + RNN+   + + I  KL+ +
Sbjct: 452 IGNLNNLTVLHLAENLISGD---IPETLCNLVNLFVLGLHRNNLSGEIPQSIG-KLEKL 506


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 158 VANLLTINYINEFNNVI*TDKLYINKGLCGLINLLTINVERNNICMVLKEFIS 316
           V NL T+ Y++   N +     YI   L  L NLL +++  NN+   L   +S
Sbjct: 507 VGNLSTLQYLSLSYNWL---SSYIPASLVNLSNLLQLDISHNNLTGALPSDLS 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,340
Number of Sequences: 37544
Number of extensions: 225561
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)