Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P17
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   266   9e-72
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   255   3e-68
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   124   9e-29
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   103   1e-22
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   9e-08
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    48   1e-05
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.032
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  266 bits (653), Expect = 9e-72
 Identities = 124/241 (51%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
 Frame = -3

Query: 769 REEVXAAPLVVKKVEP--KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 596
           +++V A P  ++      K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 8   KKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 67

Query: 595 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXX 416
            A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                    
Sbjct: 68  SAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKK 127

Query: 415 XXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 236
               KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KG
Sbjct: 128 EEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 187

Query: 235 KSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGXGVLGNKS 56
           K+ LG +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWG GV+  KS
Sbjct: 188 KASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKS 247

Query: 55  N 53
           +
Sbjct: 248 D 248


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  255 bits (624), Expect = 3e-68
 Identities = 123/241 (51%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
 Frame = -3

Query: 769 REEVXAAPLVVKKVEP--KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 596
           +++V A P  ++      K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 8   KKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 67

Query: 595 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXX 416
            A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                    
Sbjct: 68  SAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------- 112

Query: 415 XXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 236
                RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KG
Sbjct: 113 -----RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 167

Query: 235 KSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGXGVLGNKS 56
           K+ LG +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWG GV+  KS
Sbjct: 168 KASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKS 227

Query: 55  N 53
           +
Sbjct: 228 D 228


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  124 bits (298), Expect = 9e-29
 Identities = 56/100 (56%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
 Frame = -3

Query: 769 REEVXAAPLVVKKVEP--KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 596
           +++V A P  ++      K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 111 KKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 170

Query: 595 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 476
            A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 171 SAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  103 bits (247), Expect = 1e-22
 Identities = 47/82 (57%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
 Frame = -3

Query: 769 REEVXAAPLVVKKVEP--KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 596
           +++V A P  ++      K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 111 KKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 170

Query: 595 KAVLQRRLKVPPPINQFTQTLD 530
            A+LQ+RLKVPP INQF   LD
Sbjct: 171 SAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = -3

Query: 388 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 215
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94

Query: 214 VHRKTCTCLALTNVESGDRASFSKVVEAIK 125
           V R         N  S  ++   K+ E ++
Sbjct: 95  VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = -3

Query: 391 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 212
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG  V
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 211 HRKTCTCLALTNVESGDRASFSKVVEAIK 125
             +  + L         +  + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +2

Query: 434 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 553
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 561 LRSTNLPRHWTRLQLRA 511
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,775
Number of Sequences: 27780
Number of extensions: 326139
Number of successful extensions: 996
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)