Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P16
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923           31   0.97 
04_03_0235 - 13111282-13111878                                         29   3.9  
01_06_0654 + 30911416-30912071,30913664-30914348                       29   3.9  
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566...    28   5.2  
04_01_0377 - 4970034-4970687                                           28   5.2  
02_03_0339 - 17909850-17910284                                         28   6.9  

>08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923
          Length = 135

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 158 GHLQTTGRASRGGGGPLRWARGLLC 232
           G     GR   GGGG  RWA G +C
Sbjct: 7   GDAAAEGRRGEGGGGAARWAVGAVC 31


>04_03_0235 - 13111282-13111878
          Length = 198

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = -1

Query: 381 SVSPPQPCLLAFRNLRLCLVFA*TDQPRPT*R*ALTGTSRHPAIDSRTRQHNNPLAQRKG 202
           + SPP P  LA R  R            P     +T   R PA+D        P ++   
Sbjct: 73  AASPPAPASLAARRCRHL----------PPLAAVITTNRRQPAVDHIWSPLQTPTSRSCH 122

Query: 201 PPPPLEARPVV-CK*PLSGRAR 139
            PPP  + P   C  P+SGR R
Sbjct: 123 HPPPPPSFPAAGCCSPISGRPR 144


>01_06_0654 + 30911416-30912071,30913664-30914348
          Length = 446

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -1

Query: 261 HPAIDSRTRQHNNPLAQRKGPPPPLEARPVVCK*PLSGRARPVXXLTHAFXKQGVHAVHA 82
           HP+  S +R    PLA  + P P     PVV    +S  A  V  L+     + V +VHA
Sbjct: 47  HPSAGSHSRTAQLPLASSESPGPVAAGEPVV----ISLDAAAVQRLSARPAAELVVSVHA 102

Query: 81  G 79
           G
Sbjct: 103 G 103


>05_07_0066 +
           27453611-27453627,27454729-27454872,27455998-27456690,
           27457700-27458111,27458220-27458297,27458938-27458953,
           27459038-27459192
          Length = 504

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 217 ERVVMLTCPAIDGWMSTGTGKC 282
           E +V++T PAI G+ S  TG C
Sbjct: 12  ENLVLITLPAIGGFYSNTTGSC 33


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 468 CCTLWAVTSLD*QRCGRHCQSTHC 397
           CC+ W    L  + CG  CQS  C
Sbjct: 121 CCSQWGYCGLGSEFCGNGCQSGAC 144


>02_03_0339 - 17909850-17910284
          Length = 144

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 158 GHLQTTGRASRGGGGPL-RWARGLLC*RVRLSMAGCLLVPVS 280
           GH +  GR S GGG P+  W RG+   R+R+   G    P+S
Sbjct: 70  GHARPCGRRSVGGGLPVPAWQRGIS--RLRVGEFGVRPPPLS 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,155
Number of Sequences: 37544
Number of extensions: 345279
Number of successful extensions: 1170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)