Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P14
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    40   2e-04
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    30   0.100
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   1.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   4.9  
SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   4.9  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   4.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   6.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.5  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   8.6  

>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = -1

Query: 175 ENWGTEDA--DDEDVSVWEDNW-EXDVIQDDFNQQLRQQLEK 59
           ENW  +D   D  D ++WE+NW + D+  DDF+ QL+ +L+K
Sbjct: 24  ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 30.3 bits (65), Expect = 0.100
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 181 PAENWGTEDADDEDVSVWEDNWEXDVIQDDFNQQLRQQ 68
           P EN   +  D +DVS+  DN   DV QD FN++  +Q
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQ 414


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 RRLPSCLPKPIHLHHQRLLYPNFPR 180
           R+    L + IH HH+RLL+PN  R
Sbjct: 64  RKQAIILAREIH-HHRRLLHPNITR 87


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 160  EDADDEDVSVWEDNWEXDVIQDDFNQQLRQQLEKTEG 50
            ED +D++ +V       D IQD +N      LE TEG
Sbjct: 1721 EDKEDKNRTVMRSIESGDSIQDVYNVSRIFGLEATEG 1757


>SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 348 DIFYVTVHSCIVTCXLFILLH*VIFPYF 265
           D  +++  S IV+C LFIL+   IF  F
Sbjct: 41  DFLFMSFISFIVSCRLFILVFTFIFKGF 68


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 169 WGTEDADDEDVSVWEDNWEXDVIQDDFNQQLRQQLEK 59
           +G +D D+ED S  +D ++  + + +  +  R++LEK
Sbjct: 122 YGGDDYDNEDYSEEDDEFDARMEEQEALRLQRKRLEK 158


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 124  DNWEXDVIQDDFNQQLRQQLEKTEGSRNL 38
            D W   +I DD N  LR+  E  +GS+++
Sbjct: 1454 DAWAFQLIMDDINHLLRK--ENPKGSQSM 1480


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
 Frame = +1

Query: 106 RRLPSCLPKPIHLH-----HQRLLYPN-----FPREILRTRHPLL-ANQGLLSVXQPL 246
           + +P  LP PIH H     H +  YPN     FP+ I      LL A+  L  V  PL
Sbjct: 588 QNVPQQLPPPIHSHLSDDQHIQYSYPNTFVNRFPQNIHHPSANLLDASAALNPVQNPL 645


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 145 EDVSVWEDNWEXDVIQDDFNQ---QLRQQLEKTEGSRNLN 35
           +DV++W  ++   ++   FN+   +LR+ +   E S  +N
Sbjct: 643 QDVTIWSRSYTWSLVNTTFNKLAARLRRSVSNKEDSSLIN 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,079
Number of Sequences: 5004
Number of extensions: 20156
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)