Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P14
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   2.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   8.1  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 339 YVTVHSCIVTCXL 301
           Y+T +SC +TC L
Sbjct: 71  YLTNYSCFITCAL 83


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 139 HLHHQRLLYPNFP 177
           HLHH ++LY   P
Sbjct: 75  HLHHHQVLYQQSP 87


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 167 PIFRGKFFELVILF*QTKVYFLXVSHYTVYRL 262
           PIF+G  +   +L   T +Y++ +  + ++ L
Sbjct: 95  PIFKGIGYATCVLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 167 PIFRGKFFELVILF*QTKVYFLXVSHYTVYRL 262
           PIF+G  +   +L   T +Y++ +  + ++ L
Sbjct: 148 PIFKGIGYATCVLSCWTNIYYIIILAWALFYL 179


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 255 IDYRNKEISLN 287
           IDYRN ++S+N
Sbjct: 429 IDYRNNDLSIN 439


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 127 EDNWEXDVIQDDFNQQLRQQLEKTEG 50
           E+N E + IQD FN Q   ++    G
Sbjct: 291 ENNIEYEGIQDIFNTQSSAKVMSKNG 316


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 115 PSCLPKPI 138
           P C+PKPI
Sbjct: 41  PGCVPKPI 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,799
Number of Sequences: 438
Number of extensions: 1457
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)