Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P11
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   3.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   5.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    23   7.7  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 268 YSTKLNLLGSLKIFEHLKIKIKVNEIRVLNHPCLNSE 158
           YST  NLL  L+  E +  ++        NH  + SE
Sbjct: 379 YSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIRSE 415


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 286  NSSIYFYSTKLNLLGSLKIFEHLKIKIKVNEIRVLNHPC 170
            NS +    TK+++ G +++  HL +     E  ++ H C
Sbjct: 1749 NSELSRLQTKMHIPGVIELSNHLCLTASSTEWSLIKHWC 1787


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 235 KIFEHLKIKIKVNEIRVLNHPCLNSENL 152
           K+ E+LKI+  +++I V     L  EN+
Sbjct: 258 KLLEYLKIRFALDKISVSRELALAGENM 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,148
Number of Sequences: 5004
Number of extensions: 13573
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)