Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P09
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 43  KSTCYYPQHASS 78
           + TCYYP H S+
Sbjct: 385 EKTCYYPYHPST 396



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 602 LPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 492
           L P  +      K DLS   L+ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 43  KSTCYYPQHASS 78
           + TCYYP H S+
Sbjct: 385 EKTCYYPYHPST 396



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 602 LPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 492
           L P  +      K DLS   L+ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 419 LVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 306
           ++D+ I LSG     G  V+LH       + +  D++K
Sbjct: 401 ILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKK 438


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 530 SHFNPEHKDHGHPNDVNRHV 471
           S F+ + KD G PND N ++
Sbjct: 345 SSFDFQSKDQGPPNDGNGNI 364


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 300 QRWRSSRLRCHRN-SIDLQISHLLVLFN--KIYIFFKFRFSFVLYNIMLSNFF 151
           Q WR SRLR   N S D +I  +  L N  +   FFK       + + + N +
Sbjct: 59  QSWRDSRLRLPENMSEDYRILDVDWLHNIWRPDCFFKNAKKVTFHEMSIPNHY 111


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +2

Query: 158 LLNIILYNTNEKRNLKNIYIL 220
           L+ + +Y+T++ RN+ N++I+
Sbjct: 85  LVILAVYHTSKLRNVTNMFIV 105


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 252 LQISHLLVLFNKIYIFFKFRFSFVLYNIMLSNFF 151
           L  S  L LF+KI +F    +S   +   L NF+
Sbjct: 71  LMSSEELRLFDKIRVFLDEDYSSAEHFTALGNFY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,862
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)