Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P07
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.6  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   4.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   6.1  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   8.0  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 252  LHRGSVRRRVFILTLDGENIDIINFLXG-SR*LSAD 356
            L  G V+ + F+L +D E IDI+ +  G  R +S D
Sbjct: 970  LRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISLD 1005


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 425 VILRSDTEVNPDGFSFGYETDNGISAQSSGSXKKV 321
           ++ +SDT     GFS G    +G S + +G+   V
Sbjct: 99  IVFKSDTNSTSSGFSVGEAISSGYSLKYNGTESAV 133


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -2

Query: 361 MESALNHLDP*RKLIISMFSPSKVNMNTLRLTEPL*SSRIQLTRTDTNHRVSYFQLLLQC 182
           +E  L  +D  + L+ + F+  +  ++ LR    L   RIQ  R + + R   F+  ++C
Sbjct: 156 LEEVLATVDQLQSLVTN-FNDQQDEVDELRERITLKEERIQQMRNEASQRRFEFKTTIEC 214

Query: 181 LKPS 170
           L+ S
Sbjct: 215 LEES 218


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 284  EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 180
            +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955  DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 130 PKP*KSYKSRRFRAQRPPPKXSGLYXEHHTLSISI 26
           PKP KS ++  F    PPP  +G     H L+I+I
Sbjct: 50  PKP-KSIEAPMFPILLPPPNITGKLHIGHALTITI 83


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 443 GSEADAVILRSDTEVNPDGFSFGYETDNGIS 351
           G +A  V   + T    DGF +GY T+ GIS
Sbjct: 365 GIDASGVYWNASTRF-ADGFRYGYGTEVGIS 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,931
Number of Sequences: 5004
Number of extensions: 41592
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)