Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_P06
(803 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 27 0.23
AM292336-1|CAL23148.2| 455|Tribolium castaneum gustatory recept... 23 2.2
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.8
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.8
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.8
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.8
AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory recept... 23 2.8
AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1 ... 23 2.8
AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less prot... 23 2.8
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 26.6 bits (56), Expect = 0.23
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Frame = -1
Query: 584 KPGRELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDPNMKI-----PE-K 423
+PG+ L G L G + + L KG+G G Y P I +K P+ K
Sbjct: 173 QPGKGL---GKDLQGISAPVEAHLRKGRGAIG-AYGPEKSASIPKKKEVKEEIEDEPDHK 228
Query: 422 GKIYSINEGYAAEWDKGLQDYIEDKKRPKTGKAYGARYVGSMVADVHRTIKXRRNIHVSG 243
K ++ + + + D IE KRP + + S V + T +R + SG
Sbjct: 229 WKKNDSSKKKTRYYYRSVDDVIEKGKRPGAFRTTLGSEL-SKVKVIDMTGPQQRVL--SG 285
Query: 242 YQVCS*WKAPTSVRM*PDVVHR 177
Y S KAP V DVVH+
Sbjct: 286 YHALSGLKAPPGVEHFEDVVHK 307
>AM292336-1|CAL23148.2| 455|Tribolium castaneum gustatory receptor
candidate 15 protein.
Length = 455
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 334 VLGRFLSSM*SCKPLSHSAA*PSFI 408
+L RFLS SC L++ + PSF+
Sbjct: 398 ILLRFLSVFESCTRLNNESRKPSFV 422
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -3
Query: 123 CPRPYTSAFLATSARRKTL 67
CP PY RR+TL
Sbjct: 194 CPEPYVDVTFTIKIRRRTL 212
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -3
Query: 123 CPRPYTSAFLATSARRKTL 67
CP PY RR+TL
Sbjct: 194 CPEPYVDVTFTIKIRRRTL 212
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -3
Query: 123 CPRPYTSAFLATSARRKTL 67
CP PY RR+TL
Sbjct: 194 CPEPYVDVTFTIKIRRRTL 212
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -3
Query: 123 CPRPYTSAFLATSARRKTL 67
CP PY RR+TL
Sbjct: 194 CPEPYVDVTFTIKIRRRTL 212
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -3
Query: 123 CPRPYTSAFLATSARRKTL 67
CP PY RR+TL
Sbjct: 194 CPEPYVDVTFTIKIRRRTL 212
>AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory receptor
candidate 60 protein.
Length = 364
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +3
Query: 342 ALLILDVVLQTFIPFGCVTLIYRINFSFLRYFHVRVGKNE 461
+L I D++ F+ F C L N + ++H+++ + +
Sbjct: 144 SLFIFDLI---FLSFRCTKLCKEANKTAFLWYHIKIDRED 180
>AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1
protein protein.
Length = 371
Score = 23.0 bits (47), Expect = 2.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 472 EGSYMKPFTPLPFPSDKTIMVAEPYKA*PAATSSLPG 582
EGS+ P F +T PY P+ +S L G
Sbjct: 53 EGSFYLPMNMQGFVKQQTAPHGPPYAPHPSLSSGLGG 89
>AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less
protein.
Length = 312
Score = 23.0 bits (47), Expect = 2.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 601 TGSPSDFFL*IAKIDPTDTRHSMLEEPSRGSKHTTYLAS 717
T SPS+ F T TRH+ +RG+ TT +S
Sbjct: 262 TSSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASS 300
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,326
Number of Sequences: 336
Number of extensions: 4916
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -