Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P05
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0236 - 6131072-6131639,6132047-6132180                           32   0.57 
11_01_0377 + 2877530-2878577,2878721-2878803                           28   9.3  
03_06_0069 - 31449319-31450368                                         28   9.3  

>09_02_0236 - 6131072-6131639,6132047-6132180
          Length = 233

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 756 CCHIXHHPVVRCSIHLYLDRHRIRPNGYGPRPGTPLS 646
           CC   H PV R   H  LD  R+RP+   P P TP S
Sbjct: 30  CCR-HHAPVARDPAHCRLDEGRLRPS-RAPSPSTPES 64


>11_01_0377 + 2877530-2878577,2878721-2878803
          Length = 376

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 385 VITRSGSVALATVYDKLGRLTFGYCYLHGLFYLVFHYNYIKHNLFRCEDS 236
           V T  GS++ ATV   L  ++ G C++  L+ ++     + H+ F   D+
Sbjct: 243 VFTEMGSISTATVIIVLAEVSIGTCFISYLWSILLSVGLL-HDTFVSHDT 291


>03_06_0069 - 31449319-31450368
          Length = 349

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 NVSRPNLSYTVASATLPLLVITSARPSFMS 410
           N  RP   Y VA+A+LP     ++ PS +S
Sbjct: 270 NAGRPQAPYDVATASLPCTTAVTSLPSALS 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,907
Number of Sequences: 37544
Number of extensions: 361451
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)