Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_P05
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical pr...    36   0.031
Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81536-1|CAB04365.1|  333|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical
           protein R03E1.2 protein.
          Length = 324

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -2

Query: 667 PARDSIIYRMTNTRMKKD 614
           P +DSIIYRMT TRMKKD
Sbjct: 307 PEKDSIIYRMTTTRMKKD 324


>Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical
           protein W03C9.2 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 756 CCHIXHHPVVRCSIHLYLDRHRIRPNGYGPRPGTPLSI 643
           C H    P++  + H +LD   + P+ YG RP TPL++
Sbjct: 111 CSHRFQSPIISRNFHAFLD--SVCPSLYGIRP-TPLTL 145


>Z81536-1|CAB04365.1|  333|Caenorhabditis elegans Hypothetical
           protein F40D4.1 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 490 FVFRFIIN*HSHEAGLQKNITDFMISPDMKL 398
           F+FRFI+N  SH    Q+ +  F I+  ++L
Sbjct: 215 FIFRFIVNTKSHSRATQRLLLHFFIAMCIQL 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,356
Number of Sequences: 27780
Number of extensions: 339386
Number of successful extensions: 812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)