Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O24
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 226 KVSIFH-HGNHAITIHRLPSKELK 294
           K+ +F  H N  IT++R P  + K
Sbjct: 151 KIHVFSLHDNKLITMYRFPQNQFK 174


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +2

Query: 617 NFIL*VSENISSPVIMSL*IFIXMDWRRLKIIKTERTASRLNN*TGKAIHLNS 775
           +F+L VS  I++ V  +  IF+ + W + ++++ +   SR  N  G   HL++
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD---SRRKN-YGGVYHLDN 278


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 278 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 376
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 278 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 376
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 667 LIDLHXDGLEAIKNNKNRKNGFSPQQLNRKGNSFKFPYS 783
           L DL    L +I+N     +G S     R+ +  KFP S
Sbjct: 372 LQDLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPPS 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,020
Number of Sequences: 438
Number of extensions: 4619
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)