Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O23
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 89 5e-19
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 88 8e-19
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 25 4.9
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 4.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 8.5
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 8.5
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 25 8.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 8.5
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 88.6 bits (210), Expect = 5e-19
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = -1
Query: 397 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 218
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 217 HQIPLVQ 197
Q PLV+
Sbjct: 90 SQTPLVK 96
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -2
Query: 231 LCATNIRFHLYKVDNNKKLGEWAGLCKIDKDGKXKE 124
LCA + + L KV + K LGEWAGLC +D+DG ++
Sbjct: 86 LCAES-QTPLVKVADPKILGEWAGLCVLDRDGNARK 120
Score = 32.3 bits (70), Expect = 0.043
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 149 LTRMARXRKIVGCSCVVIKDFG 84
L R RK+VGCSCV + D+G
Sbjct: 112 LDRDGNARKVVGCSCVAVTDYG 133
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 87.8 bits (208), Expect = 8e-19
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = -1
Query: 397 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 218
+ V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Query: 217 HQIPLVQ 197
+ PL++
Sbjct: 87 SETPLIK 93
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -2
Query: 231 LCATNIRFHLYKVDNNKKLGEWAGLCKIDKDGKXKE 124
LCA + L KV + K LGEWAGLC +D+DG ++
Sbjct: 83 LCAES-ETPLIKVADPKVLGEWAGLCVLDRDGNARK 117
Score = 33.5 bits (73), Expect = 0.018
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 149 LTRMARXRKIVGCSCVVIKDFGRGNSSV 66
L R RK+VGCSCV + D+G ++++
Sbjct: 109 LDRDGNARKVVGCSCVAVTDYGEDSAAL 136
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.4 bits (53), Expect = 4.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 28 LARRLEVVLXAHPTLEFPRPKSLMTTQEQPTIFLXLAILVNLAETSPFSKLF 183
LARR V + A L+F + + TQ+ F IL+++A S F+K F
Sbjct: 478 LARRKLVQIGA---LKFLTRQCFIQTQDSNAAFALAKILISVAPHSIFTKAF 526
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 436 VEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLH 323
+E+ P LS D + + VL L+HGG +HG H
Sbjct: 445 LEIDLEPYLS-ETADKSESHVYVLHGVLVHGGDLHGGH 481
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 247 CMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 411
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 340 DHHGLKLSLAPLAVLHSRPC 399
D GL ++ L+++HSRPC
Sbjct: 529 DEMGLGKTIEVLSLIHSRPC 548
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -1
Query: 334 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIP 206
+GL+ ++ ++A L ++A + D + ALC + +P
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVP 176
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 247 CMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 411
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,123
Number of Sequences: 5004
Number of extensions: 42398
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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