Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O23
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 90 1e-18
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 89 1e-18
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 0.53
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 30 0.92
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 29 1.6
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 29 2.1
08_02_0101 + 12374476-12376683 29 2.8
06_03_0493 + 21402536-21404599 28 3.7
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 28 3.7
08_02_0496 - 17807720-17808078,17808503-17809139 28 4.9
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 4.9
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 27 6.5
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 8.6
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 27 8.6
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 89.8 bits (213), Expect = 1e-18
Identities = 45/82 (54%), Positives = 56/82 (68%)
Frame = -1
Query: 445 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 266
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 265 CDEAAYKKLVQALCNEHQIPLV 200
CD+ Y KLV+ALC EH + LV
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLV 84
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = -2
Query: 231 LCATNIRFHLYKVDNNKKLGEWAGLCKIDKDGKXKE 124
LCA + HL V + K LGEWAGLCKID +GK ++
Sbjct: 75 LCAEH-NVHLVTVPSAKTLGEWAGLCKIDSEGKARK 109
Score = 35.1 bits (77), Expect = 0.032
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 134 RXRKIVGCSCVVIKDFG 84
+ RK+VGCSCVV+KD+G
Sbjct: 106 KARKVVGCSCVVVKDYG 122
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 89.4 bits (212), Expect = 1e-18
Identities = 45/82 (54%), Positives = 56/82 (68%)
Frame = -1
Query: 445 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 266
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 265 CDEAAYKKLVQALCNEHQIPLV 200
CD+ Y KLV+ALC EH + LV
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLV 84
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = -2
Query: 231 LCATNIRFHLYKVDNNKKLGEWAGLCKIDKDGKXKE 124
LCA + HL V + K LGEWAGLCKID +GK ++
Sbjct: 75 LCAEH-NVHLVTVPSAKTLGEWAGLCKIDSEGKARK 109
Score = 36.3 bits (80), Expect = 0.014
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 134 RXRKIVGCSCVVIKDFG 84
+ RK+VGCSCVV+KDFG
Sbjct: 106 KARKVVGCSCVVVKDFG 122
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 367 APLAVLHSRPCCYPTRWGWWGPRLQHQP 450
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 340 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLV 200
L G+ E K++ + Q LC++A N V LC E IP V
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYV 91
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 374 LQCYIHVHVVTRQDGVGGDLDF 439
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 163 SPFSKLFVVVNLVQ-VESDVRCTEPEQVSCMQLHHSSQPKHIVLLA 297
S SK+ V + ++ +ES ++ TEP + + LH +S+P +VL A
Sbjct: 253 SDTSKMEEVTDEIRAIESSMQRTEPYKFPSLGLHSNSKPSSVVLSA 298
>08_02_0101 + 12374476-12376683
Length = 735
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 391 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENC--DEAAYKKLVQALC 224
V + L+ L+TA + L+HGL A + + + A++C D Y +V LC
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLC 188
>06_03_0493 + 21402536-21404599
Length = 687
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 385 VALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQI 209
V E+L T LIHG ++ E A L + D + Y L+Q LCN H++
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL---ELDISLYGALIQGLCNVHKL 449
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 340 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLV 200
L G+ E K++ + LCV+A N V LC E IP +
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYI 91
>08_02_0496 - 17807720-17808078,17808503-17809139
Length = 331
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 451 MADVEVEVPTNPILSGNNMD-VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 275
M+ ++ P + +L N D V V Q + L + + + QA +
Sbjct: 1 MSGIDGNKPPSEVLIDENDDWVIVKKQRITILIPPPSPAAASLQDDMQKISSEQACIAKK 60
Query: 274 A-ENCDEAAYKKLVQALCNEHQIPLVQG 194
+ ENCD A K Q N+ Q PL++G
Sbjct: 61 SMENCDAARKKHPKQMTTNKAQEPLLEG 88
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 67 TLEFPRPKSLMTTQEQPTIFLXLAILVNLAETSP 168
T E P P++ +TQEQ T L + +V +A +SP
Sbjct: 697 TQESPHPQNFQSTQEQQT-HLRMEEMVTIAASSP 729
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 394 DVNVALQEVLKTALIHGGLVHGLHEAAKALD 302
D+ V L + L++ I GLV +H+AA++++
Sbjct: 554 DIRVKLVKALQSEDISTGLVQSIHDAARSIE 584
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 397 CCYPTRWGWWGPRLQHQPWLLTI*LSCVPEKKKNSF 504
C + RW W G + +PW + + C+ EK K F
Sbjct: 358 CAFHVRWLWQGWKTPRKPWTGHV-MPCI-EKDKQLF 391
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 161 PAHSPSFLLLSTLYKWNLMFVAQSLNKFLVCS 256
P + F L LY WN + A+ LN L CS
Sbjct: 179 PRGADVFPHLLELYIWNTVMSARDLNHLLACS 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,528
Number of Sequences: 37544
Number of extensions: 296243
Number of successful extensions: 967
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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