Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O23
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 86 1e-17
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 30 0.83
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 30 0.83
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 30 0.83
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 30 0.83
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 30 0.83
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.4
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.4
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 29 1.4
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 29 2.5
AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear recep... 28 3.3
AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormo... 28 3.3
AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormo... 28 3.3
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 3.3
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z68302-1|CAA92634.2| 382|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 5.8
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 7.7
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 7.7
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 7.7
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 7.7
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 7.7
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 7.7
AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical ... 27 7.7
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 86.2 bits (204), Expect = 1e-17
Identities = 45/86 (52%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = -1
Query: 451 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 275
M+D +V P ++ MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 274 AENCDEAAYKKLVQALCNEHQIPLVQ 197
AENCDE Y KLV+ LC EHQIPL++
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIK 86
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2
Query: 231 LCATNIRFHLYKVDNNKKLGEWAGLCKIDKDGKXKE 124
LCA + + L KV + K +GE+ GLCK DK+GK ++
Sbjct: 76 LCAEH-QIPLIKVADKKIIGEYCGLCKYDKEGKARK 110
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 108 GAADNFPXPCHPCQSCRDQPILQAFCCCQPCTSGI*CSLHRA*TSFLYAASSQF 269
G+AD + C CR P++ CC C+ + S + S +YA Q+
Sbjct: 698 GSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQW 751
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 108 GAADNFPXPCHPCQSCRDQPILQAFCCCQPCTSGI*CSLHRA*TSFLYAASSQF 269
G+AD + C CR P++ CC C+ + S + S +YA Q+
Sbjct: 632 GSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQW 685
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 108 GAADNFPXPCHPCQSCRDQPILQAFCCCQPCTSGI*CSLHRA*TSFLYAASSQF 269
G+AD + C CR P++ CC C+ + S + S +YA Q+
Sbjct: 698 GSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQW 751
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 108 GAADNFPXPCHPCQSCRDQPILQAFCCCQPCTSGI*CSLHRA*TSFLYAASSQF 269
G+AD + C CR P++ CC C+ + S + S +YA Q+
Sbjct: 632 GSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQW 685
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 108 GAADNFPXPCHPCQSCRDQPILQAFCCCQPCTSGI*CSLHRA*TSFLYAASSQF 269
G+AD + C CR P++ CC C+ + S + S +YA Q+
Sbjct: 632 GSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQW 685
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 108 GAADNFPXPCHPCQSCRDQPILQAFCCCQPCTSGI*CSLHRA*TSFLYAASSQF 269
G+AD + C CR P++ CC C+ + S + S +YA Q+
Sbjct: 632 GSADCYKEACDESLECRGNPLVIKGKCCPVCSDALSSSAVCSYQSSVYAIGEQW 685
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 245 LVCSFITVLSQNT*YCLPLVKSFSGFVK 328
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 245 LVCSFITVLSQNT*YCLPLVKSFSGFVK 328
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 340 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLV 200
L G+ + K L + + +C+LA N + +C E +IP V
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYV 115
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 333 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVL 476
C PW IK +T C S+L P + GLVG T+ +++ LT L
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILTFL 377
>AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 281
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 162 GLCKIDKDGKXK-ENCRLLLCCHQRFRTRKLQ 70
G CKIDK GK + CRL +C K Q
Sbjct: 45 GNCKIDKHGKFYCKKCRLRICLEAGMDANKFQ 76
>AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform b protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 162 GLCKIDKDGKXK-ENCRLLLCCHQRFRTRKLQ 70
G CKIDK GK + CRL +C K Q
Sbjct: 48 GNCKIDKHGKFYCKKCRLRICLEAGMDANKFQ 79
>AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform a protein.
Length = 408
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 162 GLCKIDKDGKXK-ENCRLLLCCHQRFRTRKLQ 70
G CKIDK GK + CRL +C K Q
Sbjct: 48 GNCKIDKHGKFYCKKCRLRICLEAGMDANKFQ 79
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 346 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 239
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 391 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 248
V VAL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>Z68302-1|CAA92634.2| 382|Caenorhabditis elegans Hypothetical
protein ZK792.3 protein.
Length = 382
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 194 TLYKWNLMFVAQSLNKFLVCSFITVLSQNT 283
T Y+W+ M++A + F++ FI LSQ+T
Sbjct: 100 TYYQWSSMYLAVAGIAFMIPKFIWRLSQST 129
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 418 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 305
P+ +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 460 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 296
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 460 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 296
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 460 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 296
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 460 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 296
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 460 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 296
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 460 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 296
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical
protein F56B3.2a protein.
Length = 432
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 96 DDNTGAADNFPXPCHPCQSCRDQPILQAFCCCQPCTS 206
D + A P H C D QA CC +PC +
Sbjct: 227 DPDAAPALKCPSDSHYCYFLSDGSFSQAACCRRPCNA 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,576
Number of Sequences: 27780
Number of extensions: 255042
Number of successful extensions: 839
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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