Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O21
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   2.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.6  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    26   4.7  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   4.7  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.2  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   8.3  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 216 NELFSNKDTEIGDSKTCLCQNG 281
           NE+ S +D E  + K C CQ G
Sbjct: 215 NEMVSEEDMEEDNEKYCFCQQG 236


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 221 FIANLLNLLQMLKTNIFFRCSFSF*MDYNQLF 126
           F A+L +  + L   +FF CSF F + Y+ +F
Sbjct: 6   FFASLFSSFESLFFRLFFVCSFFFPLLYSFIF 37


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 442 YFKPCHGFRGISHLKYNRS 386
           Y KP H  +G++HLKY RS
Sbjct: 81  YGKPVH--QGVNHLKYQRS 97


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 442 YFKPCHGFRGISHLKYNRS 386
           Y KP H  +G++HLKY RS
Sbjct: 81  YGKPVH--QGVNHLKYQRS 97


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 580 GIKFIX-VYDAHFSLKH*TFILKENINKIDIING*AFMYL*VQFCCRYFKPCHGF 419
           GI FI   YD  F++     +  EN++ +D+     +M+L   FC  YF   H +
Sbjct: 515 GINFIENFYDNSFNMLAAPLLELENVSSLDVKKLDMYMHLCELFC--YFFRIHDY 567


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 237 DTEIGDSKTCLCQNGIGSTLDPFHHHIEFP*NNTYVNRI 353
           + E  D+   L Q    S+ DPFH H ++  +    N I
Sbjct: 84  NVESQDADETLHQEAQDSSEDPFHQHFDYDDSEVIKNSI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,850
Number of Sequences: 5004
Number of extensions: 37215
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)