Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O21
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   1.9  
Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    27   10.0 
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   10.0 

>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 225  FSNKDTEIGDSKTCLCQNGIGSTLDPFHHHIEFP 326
            F  +D+E  + K C  Q    S+L PFH ++  P
Sbjct: 3135 FGQEDSEHEELKHCSSQYSFDSSLPPFHRYVACP 3168


>Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical
           protein F42E8.1 protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 144 HLKRKRTTKKNISFKHLKEIQ*IGNELFSNKDTEIGDSKTCLCQNGI 284
           HLK  +  K+    K L E Q    +L  N DT++ D +  +CQ GI
Sbjct: 232 HLKNLKLAKQLTKSKCLDEAQSSVEDL--NSDTKLEDLQLHICQRGI 276


>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 422 FSGNLAFKV*SQLHLLEIYF-LRKYS 348
           FSGNLAF +  Q + L+ YF L +YS
Sbjct: 116 FSGNLAFLISYQFYSLKSYFPLMRYS 141


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 174 NISFKHLKEIQ*IGNELFSNKDTEIGDSKTCLCQNGIGSTL 296
           ++SF    +I  +      N+D  +G  + CLC  G G+ +
Sbjct: 14  DVSFLRTGDIVCLSCVASHNRDGVLGSERVCLCTEGFGNRM 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,166,563
Number of Sequences: 27780
Number of extensions: 198304
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)