Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O19
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   1.6  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   3.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   5.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   5.0  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   6.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.7  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   8.7  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 9   FVTNTVACAQASFSXKHLKYLNTCSTGVFPSS 104
           FV +   C++A +   HLK    C T V P S
Sbjct: 53  FVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84



 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 310 LNENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKK 206
           +NE G+  D IE +   + +E E   NLV    KK
Sbjct: 299 INECGIKHDGIEGVAIHDQKEKELSSNLVSDVAKK 333


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 56  ALEVFEHLLYWGISIFFSAALDNSDHVYVFRERRSC 163
           +L+ F  LL W +     A ++   HVY+F +   C
Sbjct: 426 SLQYFGQLLVWDVVNVCKADIEREYHVYLFEKILLC 461


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 196  ALRIFYKRNKLSSGMVRPLYI 258
            +L  FY  + L+S +V+PLYI
Sbjct: 3937 SLSTFYSASSLASSVVKPLYI 3957


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 181 DYFHRALRIFYKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFHSNTPESGLSI 336
           DY H       K+ K S        +HR  L  +   P ++HS  P S  S+
Sbjct: 87  DYHHSTSNTPTKKKKDSFDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSV 138


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 220 NKLSSGMVRPLYIHRHVLLLSRLHPS-RFHSNTPESGLS 333
           N +++  ++PL +H   L  S+ HP   FH +  ES  S
Sbjct: 207 NSVAATTLKPLQLHNTPLQTSQEHPKPSFHPSQFESSFS 245


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 319 QECLNENGLGEDAIEVIRAGEYRED-EPFQNLVYCAYKKFGALDENNRIISQVAAASFPK 143
           ++CL+ + L E  IE+IR   Y+   E F N  +C  KK GA   +    + +    F  
Sbjct: 161 KDCLSADDLDEQHIEIIRNTLYKAYLEDFYN--FC--KKIGACTAD----TMLPILEFEA 212

Query: 142 DIDVVTV-IESCGKE 101
           D   +T+ I S G E
Sbjct: 213 DRRAITITINSFGTE 227


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
 Frame = +2

Query: 86   WGISIFFSAALDNSD-----HVYVFRERRSCNLTD 175
            WG+ I F+  L N D     H Y+ R    C L D
Sbjct: 2039 WGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFD 2073


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 234 WNGSSSLYSPARITSI 281
           WNG S+ YSP  + +I
Sbjct: 342 WNGGSNTYSPTALAAI 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,830
Number of Sequences: 5004
Number of extensions: 39520
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)