Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O19
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0172 + 1362101-1363708                                           31   0.54 
04_03_0466 - 16243865-16244049,16244084-16244279                       28   3.8  
03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795     28   5.0  
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567...    27   6.6  
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927...    27   6.6  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    27   8.8  
02_05_0760 + 31548272-31548508,31548746-31548787,31548837-31550006     27   8.8  

>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = -3

Query: 364 VSFAPEVAKKLKVLIQECLNENGLGEDAI--EVIRAGEYREDEPFQNLVYCAYKKFGALD 191
           +   P+V     VL   C   +  G   +  ++I +G  R D     ++   Y + G L 
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGR-RPDVTMYTVLIDGYCQCGNLQ 280

Query: 190 ENNRIISQVAAASF-PKDIDVVTVIESCGKEDGNTPVE 80
           +  RI+ ++ AA   P ++    VIE+C KE+   P+E
Sbjct: 281 DAARIMDEMEAARVQPNEVTYSVVIEACCKEE--KPIE 316


>04_03_0466 - 16243865-16244049,16244084-16244279
          Length = 126

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 220 NKLSSGMVRPLYIHRHVLLLSRLHPSRFH-SNTPESGLSI 336
           N L++ MV   Y+HR +  LSR   +R H  N P S + I
Sbjct: 43  NGLTASMVAADYLHRRIAPLSRQDATRTHPDNLPVSVVEI 82


>03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795
          Length = 94

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 250 LYIHRHVLLLSRLHPSRFHSNTPESGLSIF*PPP 351
           L I  HVL+L    PSR  S+ P SG S+  P P
Sbjct: 24  LLISTHVLVLVHTSPSR-ESSRPPSGSSVLVPCP 56


>12_01_0667 +
           5674322-5674393,5674455-5675159,5676051-5676087,
           5676238-5676335,5676452-5676475
          Length = 311

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 211 YKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFHSNTPESGLSIF*PPPGR 357
           + R +L +    PL+ H H LL    HP R H +     L    PPP R
Sbjct: 136 FHRKELDAAAAPPLHHHHHQLLGVGAHP-RGHGHHHHHLLVAALPPPTR 183


>06_01_1126 -
           9277885-9277935,9278129-9278209,9278297-9278350,
           9278433-9278564,9278641-9278715,9279056-9279133,
           9279215-9279327,9279421-9279535,9280565-9280754,
           9281355-9281464,9281559-9281654,9281756-9281818,
           9281911-9281988,9282452-9282564,9282664-9282721,
           9282797-9282920,9282999-9283060,9283131-9283195,
           9283264-9283324,9284242-9284307,9284472-9284531,
           9284830-9284960,9285517-9285592,9285701-9285769,
           9286065-9286112,9286552-9286671,9286918-9287034,
           9287290-9287405,9288348-9288519,9289057-9289100,
           9290359-9290712,9291680-9291806
          Length = 1072

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 9   FVTNTVACAQASFSXKHLKYLNTCSTGVFPSSFPQLSITVTTSMSFGKDAAAT*LMIRLF 188
           FV +   C +     +HL+    C     P+S P +S +     S G    +T  M+  F
Sbjct: 112 FVASASCCCRHPVHQQHLRLQQPCPINTAPASMPSMSPSSNQQQS-GDIIPSTIFMLENF 170

Query: 189 S 191
           S
Sbjct: 171 S 171


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 289 EDAIEVIRAGEYREDEPFQNLVYCAYKKFGALDENNRIISQVAAASFPKDI 137
           E+AI+++            N +  A+ K G +DE  R+ +Q+  A  P D+
Sbjct: 841 EEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIPADL 891


>02_05_0760 + 31548272-31548508,31548746-31548787,31548837-31550006
          Length = 482

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 232 NLVYCAYKKFGALDENNRIISQVAAASFPKDIDVVTV-IESCGKEDGNTPVEQVFKYFKC 56
           N V  AY K G + E   ++ ++ +     D+    + I+S G++     +EQVFK    
Sbjct: 222 NGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLR 281

Query: 55  FXEKLACAHATVLVTN 8
             EK        ++TN
Sbjct: 282 SKEKPTHPTFNSMITN 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,044
Number of Sequences: 37544
Number of extensions: 253507
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)