Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O18
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    29   0.39 
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    27   2.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.8  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   6.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.4  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 364 IYSTTLFFRMLGKRCLYTI--PMSSIRFYILYKVGLLEILKTL 486
           I+ST++  R +    LY I    +SIRFY+LY V  LEI   L
Sbjct: 232 IFSTSILIRKIDVSRLYHIIRAQASIRFYVLYNV--LEIADRL 272


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 204 NCYYTIYVFCNHFCF-ICSRLQNIIISNKKAISLW 305
           N Y ++ +FC  F    C RL  +++S+ +  S+W
Sbjct: 351 NSYTSLIIFCQEFVIPACERL-TVLLSSARGKSIW 384


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 225 VFCNHFCFICSRLQNIIISNKKAISLW 305
           V  NHF +   RLQ +  S +  ISLW
Sbjct: 444 VSLNHFVYCIERLQIVSPSYEDIISLW 470


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 240 FCFICSRLQNIIISNKKAIS 299
           F ++ +RL NI+ISNKK +S
Sbjct: 348 FSWLGARLFNIVISNKKYLS 367


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 451 YKVGLLEILKTLSSVPKYSTTANNLMAFTFLASYSFKFTH 570
           Y V    IL  +S +PKY  +    +A   ++SYS  ++H
Sbjct: 117 YGVPDRRILDEISGLPKYFESNQIHVAAIIISSYSQNYSH 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,355
Number of Sequences: 5004
Number of extensions: 49610
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)