Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O18
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-l...    37   0.013
AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-l...    37   0.013
AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical...    37   0.013
Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U58754-3|AAX22293.1|  318|Caenorhabditis elegans Serpentine rece...    29   3.3  
AF040661-18|AAG24217.1|  336|Caenorhabditis elegans Serpentine r...    29   3.3  
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    28   5.8  
AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    28   5.8  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    28   5.8  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF040661-17|AAG24227.2|  336|Caenorhabditis elegans Serpentine r...    27   7.7  

>AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-like
           protein protein.
          Length = 284

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 597 YGSPISTTNMGEFKRVAGKKGES 529
           +G+P+S  NM EFKRVAGK G++
Sbjct: 260 FGTPLSALNMNEFKRVAGKAGDA 282


>AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-like
           protein TXL protein.
          Length = 284

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 597 YGSPISTTNMGEFKRVAGKKGES 529
           +G+P+S  NM EFKRVAGK G++
Sbjct: 260 FGTPLSALNMNEFKRVAGKAGDA 282


>AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical
           protein Y54E10A.3 protein.
          Length = 284

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 597 YGSPISTTNMGEFKRVAGKKGES 529
           +G+P+S  NM EFKRVAGK G++
Sbjct: 260 FGTPLSALNMNEFKRVAGKAGDA 282


>Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical
           protein T16G12.8 protein.
          Length = 378

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 466 LEILKTLSSVPKYSTTANNLMAFTFLASYSFKFTHIS 576
           + I    + +P Y++ +NNL  F+F+ +YS  F  +S
Sbjct: 253 IPICLIFNGIPLYASVSNNLSVFSFIKAYSTFFLLVS 289


>U58754-3|AAX22293.1|  318|Caenorhabditis elegans Serpentine
           receptor, class sx protein16 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 388 RMLGKRCLYTIPMSSIRFYI--LYKVGLLEILKTLSSVPKYSTTANNLMAFTFLASYS 555
           R++ K+ L T+ +  + F     +  GL  ++ +L   P+YS   +N      +A+YS
Sbjct: 208 RLIEKKALRTLKVLIVIFLFTRFFSTGLATLVTSLGIDPEYSALVHNYNVIPAMAAYS 265


>AF040661-18|AAG24217.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein60 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 LYTIPMSSIRFYILYK--VGLLEILKTLSSVPKYSTTANNLMAFTFLASYSF 558
           ++T+P+S + FYI+ K     ++ +K    +   S+T  +LM   + A Y+F
Sbjct: 33  IFTVPLSILTFYIILKKTPSRMKTMKVPLLISHASSTNLDLMFTVYSAPYAF 84


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 272 YILQSTAYKTKMIAKYIYCVVTVPLCNLELQYLKHSIV 159
           YIL    +  K+  +Y +CV T  +   E+  L H ++
Sbjct: 60  YILPLQIFPVKIFVRYSHCVGTAAMAVYEISNLSHFLI 97


>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 LYTIPMSSIRFYILYK--VGLLEILKTLSSVPKYSTTANNLMAFTFLASYSF 558
           ++T+P+S + FYI+ K     +E +K    +   S+T  +LM   + A Y F
Sbjct: 33  IFTVPLSILTFYIILKKTPSRMEPMKMPLLISHASSTNLDLMFTVYSAPYIF 84


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 LYTIPMSSIRFYILYK--VGLLEILKTLSSVPKYSTTANNLMAFTFLASYSF 558
           ++T+P+S + FYI+ K     +E +K    +   S+T  +LM   + A Y F
Sbjct: 33  IFTVPLSILTFYIILKKTPSRMEPMKMPLLISHASSTNLDLMFTVYSAPYIF 84


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 490 WTMFLKFLTIRLCTKCKILLKT 425
           W+   KFL+IR+  K KI+++T
Sbjct: 742 WSFLYKFLSIRVFNKAKIVIET 763


>AF040661-17|AAG24227.2|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein59 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 LYTIPMSSIRFYILYKVGL--LEILKTLSSVPKYSTTANNLMAFTFLASYSF 558
           ++T+P+S + FYI+ K  L  ++ +K    +  + +T  +LM   + A Y F
Sbjct: 33  IFTVPLSILAFYIILKKTLSRMKTMKVPLLIFHFWSTNLDLMFTVYTAPYIF 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,164
Number of Sequences: 27780
Number of extensions: 274825
Number of successful extensions: 540
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)