Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O18
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 417 NTHVFNKILHFVQSRIVRNFKNIVQCA 497
           +T+  N+ LHFV++ +     ++++CA
Sbjct: 28  DTYALNQSLHFVRASLSNLDMSVLECA 54


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 417 NTHVFNKILHFVQSRIVRNFKNIVQCA 497
           +T+  N+ LHFV++ +     ++++CA
Sbjct: 118 DTYALNQSLHFVRASLSNLDMSVLECA 144


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 NCYYTIYVFCNHFCFICSRLQNI 272
           NCYY  +V    FC I + L ++
Sbjct: 112 NCYYETWVLGPLFCQIYAMLGSL 134


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 NCYYTIYVFCNHFCFICSRLQNI 272
           NCYY  +V    FC I + L ++
Sbjct: 78  NCYYETWVLGPLFCQIYAMLGSL 100


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 412 YTIPMSSIRFYILYKVGLLEILKTLSSVPKYS 507
           Y+  M    FY+LY+  L   L+     P+YS
Sbjct: 411 YSTSMRDPAFYMLYQKILSYFLRYKKLQPQYS 442


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 412 YTIPMSSIRFYILYKVGLLEILKTLSSVPKYS 507
           Y+  M    FY+LY+  L   L+     P+YS
Sbjct: 411 YSTSMRDPAFYMLYQNILSYFLRYKKLQPQYS 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,995
Number of Sequences: 438
Number of extensions: 3484
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)