Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O16
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    30   0.33 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    29   0.76 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    27   2.3  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   4.1  

>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 498 VIEKDGDVARDESAKGRDGAESEADASPQXQGDPADASRVGAESQT 361
           VI KDG  ++ ES+K     ESE+ ASP     P     V + +Q+
Sbjct: 525 VIHKDGRNSKRESSKINSVTESESTASPAASVIPVGTESVTSSTQS 570


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 23/109 (21%), Positives = 48/109 (44%)
 Frame = -1

Query: 711 NRYKKEVSDSTPEKRLRNRTFPDSANDREDIKSITKSDVIAYKADTLTKRPWQRNEDKYR 532
           +R KK+   S+ E+        +SA+  E   S  +S+    + +   K+    +ED   
Sbjct: 28  SRLKKQDDSSSEEESSEE----ESASSSESESSEEESESEESEVEVPKKKAVAASEDSES 83

Query: 531 LSAXXXXXESAVIEKDGDVARDESAKGRDGAESEADASPQXQGDPADAS 385
            S      E    E+D +V+ +  ++    +ESE ++  + + D ++ S
Sbjct: 84  DSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERS 132


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 408 QGDPADASRVGAESQTGHDQITGARYKGFQ 319
           + DP+ ASR  A+SQ    Q +  ++KGFQ
Sbjct: 534 ENDPSLASRQPAQSQQQSSQRSRNKFKGFQ 563


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 298 FVKMKCRLETFVPSTSYLVMPCLALRSH 381
           F  +KCR    VP+T  LV    AL+ H
Sbjct: 713 FFNIKCRYSKLVPNTVVLVTTVKALKLH 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,800
Number of Sequences: 5004
Number of extensions: 42614
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)