Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O16
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48...    33   0.34 
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    31   1.4  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    29   3.2  
01_02_0075 + 10873789-10873871,10873883-10874420                       29   3.2  
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697     28   7.4  
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076...    28   7.4  
04_04_0184 - 23398023-23398385,23398512-23398517                       28   7.4  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    28   9.8  

>03_01_0058 -
           478708-478731,478802-478834,478953-479100,479423-480072
          Length = 284

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 430 FALSTVPPFRTLVPRYIPVLLYHSTLSPLPLGRQSVFVLVPLPRPLREGV 579
           F  S   P   L    +P+LL   TL+PLPL    +   +PLP  L+ GV
Sbjct: 26  FRYSAAIPDYCLYCHNVPILLLVYTLAPLPLALLELRRHLPLPHKLQPGV 75


>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +1

Query: 505 LSPLPLGRQSVFVLVPLPRPLREGVGLVRDDVTLGDALDVLPVVGGVREGAVPQALLRRG 684
           LS +P  R+++ +     R  +   GLV     +G A   L   G V+  A+  ALLR  
Sbjct: 282 LSKMPYIREALLLPALANRSEKTIAGLVCLMCEVGQAAPALVAEGSVQALALADALLRCS 341

Query: 685 VGHFLL 702
           + HF+L
Sbjct: 342 LAHFIL 347


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 574 GVGLVRDDVTLGDALDVLPVVGGVREGAVPQALLRRGVGHFLLVAVESXLQTGALSRWA 750
           GVG V +D     A+ +L  VG      V  A L+RG+ HF+LV   +   T  ++ +A
Sbjct: 2   GVGRVMNDAKPYLAM-ILLQVGFAGMYVVAVASLKRGMSHFVLVVYRNLFATAVMAPFA 59


>01_02_0075 + 10873789-10873871,10873883-10874420
          Length = 206

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 550 PLPRPLREGVGLVRDDVTLG-DALDVLPVVGGVREGAVPQALLRRGVG 690
           PLP  L  G G+V ++ T G +ALD  P+VGG  E A   + +RR  G
Sbjct: 30  PLP-DLAGGGGVVEEEATGGGEALD--PMVGGAVEAAAAGSSMRRWGG 74


>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
          Length = 375

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 603 SW*CS*CPPCRWRSPGRCGSAGASPAWS 686
           SW C  C  C   +   CGS GA P W+
Sbjct: 22  SWECDPCA-CAATAGSPCGSCGAPPPWA 48


>04_04_1677 +
           35306232-35306328,35306697-35307248,35307324-35307608,
           35308035-35308296,35308378-35308430,35308520-35308587,
           35310331-35310420,35310502-35310586,35310822-35311254,
           35312872-35313439,35313527-35314000
          Length = 988

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 453 GRDGAESEADASPQXQGDPADASRVGAESQTGHDQI 346
           GRD + S     P+ +GD + + R GA +  G  +I
Sbjct: 739 GRDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGWQEI 774


>04_04_0184 - 23398023-23398385,23398512-23398517
          Length = 122

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +1

Query: 580 GLVRDDVTLGDALDVLPVVGGVREGAVPQALLRRGVGHFLLVAVE 714
           G+   +VT GD  D L VVG   + A     LR+ +GH  LV VE
Sbjct: 29  GVSSVEVT-GDGKDRLQVVGDGVDAACLVTCLRKKIGHAELVQVE 72


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 486 DGDVARDESAKGRDGAESEADASPQXQGDPADASRV 379
           DGD    E+A G D  ESE   +P   GD ++A  V
Sbjct: 448 DGDSPETEAA-GDDAKESEGKNNPHGHGDSSEAISV 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,674
Number of Sequences: 37544
Number of extensions: 300551
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)