Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O16
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   5.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 512 LSLSADNLYLSSFLCHGLF 568
           LS   +NLY S  L HGL+
Sbjct: 261 LSPVTNNLYYSPLLSHGLY 279


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 466 VPRYIPVLLYHSTLSPLPLG 525
           VP  IPV +Y+    P P+G
Sbjct: 113 VPVPIPVPVYYGNFLPRPMG 132


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 466 VPRYIPVLLYHSTLSPLPLG 525
           +P  +PV +Y+    P P+G
Sbjct: 336 IPVPVPVPIYYGNFPPRPMG 355



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 319 NNYNNKKLYYNINYI 333


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 99  NNNYNKKLYYNINYI 113


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 101 NNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 101 NNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 101 NNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 101 NNNYNKKLYYNINYI 115


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   NSIHNRIIYYTFNYV 52
           N+ +N+ +YY  NY+
Sbjct: 337 NNNYNKKLYYNINYI 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,161
Number of Sequences: 438
Number of extensions: 3354
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)